Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 1.1e-58 229.9 130 100.0
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 1.8e-50 202.6 131 87.0
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 4.7e-46 188.0 132 79.5
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 2.0e-44 182.6 135 74.8
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 9.8e-44 180.3 131 65.6
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 2.4e-42 175.6 137 68.6
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 2.4e-42 175.6 123 67.5
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 2.4e-42 175.6 131 67.2
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 7.0e-42 174.1 126 66.7
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 7.0e-42 174.1 138 65.9
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 9.2e-42 173.7 123 67.5
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 1.2e-41 173.3 130 63.8
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 1.6e-41 172.9 124 67.7
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 2.0e-41 172.6 135 73.3
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 2.0e-41 172.6 130 65.4
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 2.7e-41 172.2 123 65.9
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 2.7e-41 172.2 130 65.4
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 2.7e-41 172.2 132 62.9
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 2.7e-41 172.2 122 66.4
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 4.6e-41 171.4 123 67.5
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 4.6e-41 171.4 129 62.8
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 6.0e-41 171.0 137 65.0
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 6.0e-41 171.0 124 66.1
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 6.0e-41 171.0 124 66.9
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 7.8e-41 170.6 137 65.0
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 1.0e-40 170.2 129 62.0
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 1.3e-40 169.9 123 65.0
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 1.3e-40 169.9 126 63.5
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 1.3e-40 169.9 130 61.5
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 1.3e-40 169.9 124 66.1
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 1.3e-40 169.9 126 65.9
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 1.3e-40 169.9 123 77.2
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 2.3e-40 169.1 122 65.6
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 2.3e-40 169.1 125 64.8
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 3.0e-40 168.7 124 66.1
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 3.0e-40 168.7 124 66.1
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 3.0e-40 168.7 122 63.1
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 3.9e-40 168.3 123 66.7
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 3.9e-40 168.3 123 66.7
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 3.9e-40 168.3 123 65.0
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 3.9e-40 168.3 124 66.1
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 5.0e-40 167.9 129 62.0
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 8.6e-40 167.2 129 62.8
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 8.6e-40 167.2 123 65.0
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 8.6e-40 167.2 122 63.1
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 8.6e-40 167.2 129 62.8
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 1.1e-39 166.8 129 62.8
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 1.1e-39 166.8 123 65.9
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 1.1e-39 166.8 137 61.3
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 1.1e-39 166.8 123 66.7
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 1.5e-39 166.4 132 64.4
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 1.5e-39 166.4 123 66.7
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 1.5e-39 166.4 122 62.3
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.9e-39 166.0 126 62.7
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 1.9e-39 166.0 123 66.7
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 2.5e-39 165.6 122 65.6
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 2.5e-39 165.6 122 72.1
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 3.3e-39 165.2 128 62.5
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 3.3e-39 165.2 126 73.0
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 4.3e-39 164.9 122 60.7
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 5.6e-39 164.5 123 65.9
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 7.3e-39 164.1 123 61.8
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 9.5e-39 163.7 126 61.1
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 9.5e-39 163.7 122 62.3
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.2e-38 163.3 144 57.6
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.2e-38 163.3 144 57.6
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 1.2e-38 163.3 131 66.4
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.6e-38 162.9 144 56.9
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.6e-38 162.9 123 65.0
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 6.2e-38 161.0 127 61.4
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 6.2e-38 161.0 129 60.5
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 6.2e-38 161.0 129 60.5
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 6.2e-38 161.0 129 60.5
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 8.0e-38 160.6 123 72.4
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 8.0e-38 160.6 127 61.4
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 1.1e-37 160.2 133 58.6
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 1.4e-37 159.8 127 60.6
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 1.8e-37 159.5 131 58.8
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 2.3e-37 159.1 130 58.5
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 2.3e-37 159.1 127 59.8
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 2.3e-37 159.1 127 59.8
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 2.3e-37 159.1 144 55.6
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 4.0e-37 158.3 128 67.2
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 5.2e-37 157.9 123 74.8
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 1.2e-36 156.8 122 59.8
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 1.5e-36 156.4 127 58.3
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 1.5e-36 156.4 127 58.3
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 1.5e-36 156.4 127 58.3
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 2.0e-36 156.0 127 59.1
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 2.6e-36 155.6 127 58.3
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 2.6e-36 155.6 130 56.9
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 4.4e-36 154.8 123 60.2
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 5.8e-36 154.5 128 57.8
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 5.8e-36 154.5 132 60.6
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 5.8e-36 154.5 133 59.4
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 5.8e-36 154.5 125 70.4
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 7.5e-36 154.1 127 57.5
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 7.5e-36 154.1 131 56.5
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 7.5e-36 154.1 130 57.7
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 7.5e-36 154.1 127 58.3
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 7.5e-36 154.1 122 59.0
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 9.8e-36 153.7 147 52.4
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 9.8e-36 153.7 123 61.8
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 2.2e-35 152.5 122 59.8
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 2.9e-35 152.1 125 58.4
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 3.7e-35 151.8 122 61.5
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 3.7e-35 151.8 122 58.2
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 4.9e-35 151.4 123 62.6
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 4.9e-35 151.4 130 61.5
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 6.4e-35 151.0 123 61.0
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 8.3e-35 150.6 125 61.6
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 1.4e-34 149.8 122 59.8
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 7.0e-34 147.5 124 56.5
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 1.2e-33 146.7 122 57.4
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 1.0e-32 143.7 122 56.6
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 2.3e-32 142.5 122 56.6
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 1.5e-31 139.8 122 54.1
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 9.5e-31 137.1 123 54.5
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.1e-30 136.0 122 54.1
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 4.7e-30 134.8 145 49.0
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 4.7e-30 134.8 124 51.6
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 6.2e-30 134.4 123 51.2
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 2.0e-28 129.4 145 52.4
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 5.8e-28 127.9 121 66.9
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 6.4e-27 124.4 73 82.2
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 1.1e-26 123.6 95 61.1
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 1.1e-26 123.6 146 46.6
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 1.4e-26 123.2 65 89.2
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 7.1e-26 120.9 99 57.6
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 8.6e-24 114.0 65 83.1
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 8.6e-24 114.0 65 81.5
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 4.3e-23 111.7 68 72.1
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 7.3e-23 110.9 65 75.4
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 1.1e-21 107.1 125 43.2
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 3.4e-20 102.1 65 73.8
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 7.6e-20 100.9 125 41.6
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 1.9e-18 96.3 49 91.8
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 1.2e-17 93.6 146 37.7
PRCOL_00004651 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 1.7e-11 73.2 125 36.0
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 5.4e-10 68.2 33 81.8


User provided reference genes

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