Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 5.1e-254 880.6 437 100.0
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 6.0e-186 654.4 402 81.8
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 7.1e-179 630.9 379 83.1
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 6.0e-178 627.9 379 81.5
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 1.2e-173 613.6 414 72.5
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 1.5e-173 613.2 414 72.7
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 1.7e-169 599.7 389 76.6
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.8e-166 589.7 411 71.5
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 4.0e-166 588.6 395 74.7
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 4.0e-166 588.6 380 74.5
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 5.3e-166 588.2 392 75.0
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 4.9e-164 581.6 384 74.2
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 1.4e-163 580.1 394 73.6
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 2.7e-162 575.9 384 74.2
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.7e-162 575.9 409 69.7
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 7.8e-162 574.3 412 70.4
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.3e-161 572.8 389 72.0
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.0e-161 572.4 384 73.4
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 5.1e-161 571.6 385 74.5
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 6.6e-161 571.2 384 73.2
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 2.1e-159 566.2 419 68.0
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 4.8e-159 565.1 408 69.1
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 3.1e-158 562.4 391 69.6
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 4.0e-158 562.0 397 70.8
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 5.3e-158 561.6 379 73.1
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 9.0e-158 560.8 379 71.0
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 1.2e-157 560.5 394 70.8
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.4e-157 558.9 361 75.9
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 3.4e-157 558.9 394 70.3
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 5.8e-157 558.1 392 72.2
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 7.6e-157 557.8 385 70.4
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 1.7e-156 556.6 376 72.6
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 2.2e-156 556.2 393 69.7
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 2.2e-156 556.2 376 71.8
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 8.4e-156 554.3 381 71.9
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 8.4e-156 554.3 410 69.5
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 4.2e-155 552.0 422 66.4
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 5.4e-155 551.6 401 69.8
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 9.3e-155 550.8 381 71.9
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 1.2e-154 550.4 385 70.6
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 2.1e-154 549.7 380 71.1
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 2.1e-154 549.7 368 75.3
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 2.1e-154 549.7 391 70.1
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 2.7e-154 549.3 360 75.6
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 4.6e-154 548.5 380 70.8
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 7.9e-154 547.7 381 69.0
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 7.9e-154 547.7 411 67.9
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 1.3e-153 547.0 428 65.7
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 3.0e-153 545.8 392 69.4
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 6.7e-153 544.7 398 68.3
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 8.7e-153 544.3 395 70.4
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 8.7e-153 544.3 385 69.9
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.5e-152 543.5 405 66.2
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 5.6e-152 541.6 421 65.1
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 7.4e-152 541.2 375 69.9
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 9.6e-152 540.8 380 70.3
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 4.8e-151 538.5 386 67.9
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 6.2e-151 538.1 364 73.9
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 8.1e-151 537.7 384 68.5
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 1.8e-150 536.6 375 69.1
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 2.4e-150 536.2 410 65.1
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 2.4e-150 536.2 410 65.1
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 6.9e-150 534.6 371 70.4
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 6.9e-150 534.6 401 65.8
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 2.6e-149 532.7 374 70.3
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 3.4e-149 532.3 350 75.7
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 3.4e-149 532.3 412 64.6
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 7.6e-149 531.2 389 68.9
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 7.6e-149 531.2 384 70.3
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 1.7e-148 530.0 367 70.3
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 2.2e-148 529.6 393 67.4
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 2.9e-148 529.3 393 69.0
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 4.9e-148 528.5 460 59.3
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 4.9e-148 528.5 384 67.7
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.4e-147 526.9 392 66.6
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 5.5e-147 525.0 398 66.1
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 5.5e-147 525.0 391 65.7
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 7.1e-147 524.6 418 63.9
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 9.3e-147 524.2 377 67.9
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 3.5e-146 522.3 382 67.3
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 7.9e-146 521.2 435 61.1
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 3.0e-145 519.2 385 66.8
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.3e-143 513.8 368 71.2
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 1.6e-143 513.5 386 66.1
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 1.1e-142 510.8 418 62.4
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.4e-142 510.4 375 66.9
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.5e-141 506.9 370 69.5
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.5e-141 506.9 370 69.5
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 4.5e-141 505.4 397 64.7
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 4.5e-141 505.4 388 64.7
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.7e-140 503.4 377 67.9
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 2.2e-140 503.1 383 68.7
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 8.4e-140 501.1 377 67.6
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.0e-129 467.6 375 62.7
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 3.9e-129 465.7 439 58.3
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 1.3e-127 460.7 363 63.1
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 5.9e-125 451.8 369 61.8
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 3.8e-124 449.1 379 61.2
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 1.6e-122 443.7 361 64.0
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 4.8e-119 432.2 370 60.3
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 4.8e-119 432.2 385 59.5
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 3.1e-118 429.5 387 56.1
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 1.3e-116 424.1 370 59.2
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 4.2e-115 419.1 383 55.4
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.8e-111 406.4 370 58.9
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 8.2e-111 404.8 371 56.3
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 5.3e-110 402.1 381 53.8
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 8.8e-105 384.8 389 51.2
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 2.2e-100 370.2 278 66.2
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 2.9e-100 369.8 379 50.7
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 6.3e-95 352.1 317 58.7
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 1.8e-94 350.5 267 65.2
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 5.9e-93 345.5 381 48.8
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 3.2e-86 323.2 320 53.4
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.0e-84 315.8 223 65.9
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.2e-79 300.4 177 79.7
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.2e-79 300.4 177 79.7
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 3.3e-75 286.6 393 42.5
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 4.4e-64 249.6 377 41.9
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 9.2e-62 241.9 174 67.8
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 1.3e-55 221.5 437 37.3
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 4.8e-50 203.0 118 81.4
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 2.8e-42 177.2 400 36.2
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.6e-40 170.6 127 69.3
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.7e-39 167.9 132 65.2
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.0e-37 159.5 143 60.8
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 1.6e-29 134.8 396 32.1
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 8.7e-28 129.0 83 72.3
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 7.9e-13 79.3 80 53.8
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 3.3e-11 73.9 101 41.6
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.9e-08 63.2 73 46.6
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.9e-08 63.2 73 46.6
C07p39160 Brassica napus HOM05D006204 ORTHO05D007851 1.1e-06 58.9 467 24.4
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 2.5e-06 57.8 325 24.0
BraA06t26832Z Brassica rapa HOM05D006204 ORTHO05D007851 7.2e-06 56.2 466 23.4
A06p39170 Brassica napus HOM05D006204 ORTHO05D007851 9.4e-06 55.8 455 23.5


User provided reference genes

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