Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 3.3e-173 611.7 326 100.0
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 3.4e-101 372.5 343 62.4
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 2.1e-71 273.5 339 52.5
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 2.8e-63 246.5 338 49.4
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.4e-62 244.2 327 50.5
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 6.0e-58 228.8 311 52.7
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 4.5e-53 212.6 357 43.7
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 9.7e-48 194.9 319 51.4
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 6.9e-46 188.7 341 44.6
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.2e-45 188.0 316 45.3
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 5.5e-43 179.1 328 42.1
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 7.2e-43 178.7 313 45.4
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 4.6e-42 176.0 337 40.9
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.5e-40 171.0 339 40.7
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 6.3e-39 165.6 351 37.6
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 4.1e-38 162.9 329 39.8
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 5.9e-37 159.1 306 39.9
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 7.7e-37 158.7 367 36.5
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 1.3e-36 157.9 319 39.8
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 5.0e-36 156.0 322 37.6
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.4e-35 154.5 346 39.6
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.1e-34 150.6 348 37.6
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 7.9e-34 148.7 317 42.6
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.1e-33 146.0 348 37.1
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 5.1e-33 146.0 325 34.2
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 5.1e-33 146.0 292 39.0
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 4.4e-32 142.9 293 39.2
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.2e-31 140.6 310 36.8
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.2e-31 140.6 362 34.3
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 2.8e-31 140.2 382 34.8
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 3.7e-31 139.8 391 36.8
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.1e-30 136.7 327 35.5
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 7.0e-30 135.6 367 34.3
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 9.1e-30 135.2 331 38.7
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 9.1e-30 135.2 329 35.3
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.5e-29 134.4 369 35.2
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 1.5e-29 134.4 319 36.4
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 7.7e-29 132.1 340 34.7
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.0e-28 131.7 339 34.5
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.3e-28 131.3 317 35.3
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.9e-28 130.2 368 33.4
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.0e-28 129.4 340 34.4
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 8.5e-28 128.6 370 32.4
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 8.5e-28 128.6 343 37.6
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 2.5e-27 127.1 379 33.0
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.1e-26 124.0 360 32.8
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 8.0e-26 122.1 278 38.5
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.0e-25 121.7 325 33.5
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 1.0e-25 121.7 349 33.2
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 3.9e-25 119.8 328 36.3
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 5.2e-25 119.4 354 34.2
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.1e-24 118.2 197 46.2
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 1.1e-24 118.2 351 32.2
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 1.5e-24 117.9 358 31.8
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.0e-24 117.5 325 32.9
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 2.0e-24 117.5 344 36.6
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 2.6e-24 117.1 314 35.0
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 4.4e-24 116.3 169 43.8
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.7e-23 114.4 341 35.2
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 2.2e-23 114.0 353 34.6
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 2.2e-23 114.0 252 36.5
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.8e-23 113.6 353 30.9
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.8e-22 110.9 332 34.9
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 3.1e-22 110.2 332 35.5
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 3.1e-22 110.2 380 32.9
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 4.1e-22 109.8 352 31.5
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 4.1e-22 109.8 339 32.7
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 5.3e-22 109.4 355 31.3
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 1.6e-21 107.8 393 33.3
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.5e-21 106.7 372 29.6
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.0e-20 105.1 354 32.8
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.3e-20 104.8 373 29.8
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 1.7e-20 104.4 339 32.4
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 1.7e-20 104.4 270 40.0
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 1.7e-20 104.4 309 33.7
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 1.7e-20 104.4 309 33.7
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.9e-20 103.6 373 29.8
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 3.8e-20 103.2 334 32.6
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 3.8e-20 103.2 198 43.4
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 5.0e-20 102.8 211 40.3
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 5.0e-20 102.8 321 32.4
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.5e-20 102.1 371 29.4
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.1e-19 101.7 261 34.5
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 1.1e-19 101.7 303 33.7
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.5e-19 101.3 363 31.1
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 1.5e-19 101.3 358 32.1
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 1.5e-19 101.3 321 32.1
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.6e-18 97.8 336 35.7
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.7e-18 97.1 253 35.2
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.7e-18 96.3 261 33.7
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.0e-18 95.5 368 29.1
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 1.4e-17 94.7 351 31.1
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 1.4e-17 94.7 368 29.6
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 1.8e-17 94.4 319 33.2
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 4.0e-17 93.2 330 29.1
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 5.2e-17 92.8 288 35.4
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 5.2e-17 92.8 346 32.9
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 8.8e-17 92.0 336 31.5
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 2.0e-16 90.9 216 38.0
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 2.6e-16 90.5 331 32.0
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 7.5e-16 89.0 356 31.2
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 9.7e-16 88.6 322 31.1
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.7e-15 87.8 247 36.0
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 1.1e-14 85.1 321 30.8
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 3.1e-14 83.6 307 33.2
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 3.1e-14 83.6 307 33.2
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 3.1e-14 83.6 307 33.2
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 3.1e-14 83.6 363 32.2
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 4.1e-14 83.2 332 28.9
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 1.6e-13 81.3 373 29.0
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 1.0e-12 78.6 349 28.7
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 1.3e-12 78.2 300 34.3
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 2.2e-12 77.4 307 34.5
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 2.9e-12 77.0 308 33.4
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 5.0e-12 76.3 199 36.2
Nitab4.5_0000419g0140 Nicotiana tabacum HOM05D005407 ORTHO05D006544 6.5e-12 75.9 170 41.8
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 8.5e-12 75.5 323 30.7
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 4.2e-11 73.2 199 35.7
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 7.2e-11 72.4 303 32.0
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 4.7e-10 69.7 329 34.0
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 6.1e-10 69.3 276 31.9
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 8.0e-10 68.9 186 35.5
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 1.0e-09 68.6 205 34.1
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 1.0e-09 68.6 202 34.2
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 1.8e-09 67.8 176 36.9
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 6.8e-09 65.9 193 34.2
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 1.5e-08 64.7 313 30.4
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 2.0e-08 64.3 187 34.8
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 2.0e-08 64.3 187 34.8
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 4.4e-08 63.2 194 34.5
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 3.7e-07 60.1 200 33.0
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.8e-07 59.7 73 46.6
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 4.8e-07 59.7 204 29.9
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 6.3e-07 59.3 198 30.8
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 8.3e-07 58.9 284 26.8
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 8.3e-07 58.9 302 31.5
Zm00001eb413970 Zea mays HOM05D013881 ORTHO05D016369 1.1e-06 58.5 200 32.5
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 1.4e-06 58.2 257 30.4
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 1.4e-06 58.2 204 31.9
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 3.1e-06 57.0 312 26.6
Nitab4.5_0005127g0030 Nicotiana tabacum HOM05D005407 ORTHO05D006544 5.4e-06 56.2 131 42.7
Os07g0589600 Oryza sativa ssp. japonica HOM05D013881 ORTHO05D016369 5.4e-06 56.2 263 28.1
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 9.1e-06 55.5 217 30.0


User provided reference genes

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