Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 1.8e-246 855.5 434 100.0
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 6.7e-214 747.3 425 87.5
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 1.5e-213 746.1 425 87.5
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 3.3e-213 745.0 425 87.5
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.7e-212 742.7 425 88.0
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 2.8e-212 741.9 425 87.5
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 6.3e-212 740.7 425 87.3
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 4.1e-211 738.0 425 86.1
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 3.8e-209 731.5 425 85.6
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 1.9e-208 729.2 425 85.9
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 3.2e-208 728.4 425 84.9
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 4.7e-207 724.5 425 84.0
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 8.0e-207 723.8 425 84.9
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 1.0e-206 723.4 425 84.9
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 3.0e-206 721.8 423 85.3
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 3.9e-206 721.5 425 85.2
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 3.9e-206 721.5 425 84.0
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 3.9e-206 721.5 425 83.8
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 6.7e-206 720.7 424 84.0
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 1.1e-205 719.9 425 84.5
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 1.5e-205 719.5 425 84.2
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 1.5e-205 719.5 425 83.5
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 2.0e-205 719.2 425 84.9
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 2.6e-205 718.8 425 83.8
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 2.6e-205 718.8 424 84.0
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 5.7e-205 717.6 425 84.7
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 5.7e-205 717.6 425 84.7
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 5.7e-205 717.6 426 84.7
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.7e-204 716.1 426 84.3
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 3.7e-204 714.9 422 84.8
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 8.2e-204 713.8 426 83.8
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 8.2e-204 713.8 425 82.8
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 1.4e-203 713.0 425 83.1
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 1.4e-203 713.0 425 82.6
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.4e-203 713.0 425 84.2
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.8e-203 712.6 425 84.2
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 5.3e-203 711.1 422 84.4
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 5.3e-203 711.1 425 84.0
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 2.0e-202 709.1 424 83.3
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 3.5e-202 708.4 425 82.8
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.5e-202 708.0 424 82.1
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 4.5e-202 708.0 425 83.3
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 5.9e-202 707.6 425 82.4
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 1.0e-201 706.8 425 82.4
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 1.3e-201 706.4 442 81.4
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.7e-201 706.1 424 82.1
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.7e-201 706.1 424 81.8
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 8.5e-201 703.7 425 84.5
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 1.1e-200 703.4 424 81.6
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 1.5e-200 703.0 425 81.4
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 1.9e-200 702.6 426 81.7
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 3.2e-200 701.8 417 84.2
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 5.5e-200 701.0 433 82.0
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 5.5e-200 701.0 425 82.1
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 5.5e-200 701.0 425 82.4
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 7.2e-200 700.7 425 82.8
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 7.2e-200 700.7 425 82.8
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 7.2e-200 700.7 425 81.4
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 9.4e-200 700.3 425 81.2
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 1.6e-199 699.5 425 82.6
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 1.6e-199 699.5 425 81.9
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 2.1e-199 699.1 425 82.8
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 2.1e-199 699.1 421 82.2
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.1e-199 699.1 423 82.5
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 2.7e-199 698.7 425 82.6
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 2.7e-199 698.7 425 82.6
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 2.7e-199 698.7 425 82.6
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 6.1e-199 697.6 425 82.4
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 8.0e-199 697.2 425 81.2
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 1.8e-198 696.0 425 82.1
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 2.3e-198 695.7 425 82.6
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.0e-198 694.9 414 82.9
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 5.2e-198 694.5 420 82.6
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.7e-198 694.1 438 79.2
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 1.2e-197 693.3 420 82.6
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 2.0e-197 692.6 422 81.3
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 2.6e-197 692.2 425 82.6
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 2.6e-197 692.2 415 82.9
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 3.3e-197 691.8 425 82.6
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 4.4e-197 691.4 421 81.0
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 1.3e-196 689.9 425 82.4
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 6.3e-196 687.6 449 78.8
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.1e-195 686.8 425 78.8
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 7.0e-195 684.1 415 82.2
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 2.7e-194 682.2 421 80.8
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 4.5e-194 681.4 424 78.5
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 6.5e-193 677.6 413 83.1
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.9e-192 676.0 425 77.6
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 1.2e-191 673.3 471 75.2
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 6.1e-191 671.0 424 77.6
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.0e-190 668.3 425 76.9
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 1.2e-189 666.8 422 78.7
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 4.4e-189 664.8 422 78.4
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 7.5e-189 664.1 422 76.3
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 9.8e-189 663.7 425 76.7
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 2.2e-188 662.5 425 76.5
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 1.6e-186 656.4 420 76.2
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 3.5e-186 655.2 425 78.8
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.5e-186 655.2 433 78.5
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 7.7e-186 654.1 425 79.1
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 5.5e-184 647.9 423 75.4
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 3.6e-183 645.2 442 76.5
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 1.0e-182 643.7 423 75.2
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.0e-182 641.7 419 75.4
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 5.2e-182 641.3 611 58.3
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 6.8e-182 641.0 436 73.2
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 8.9e-182 640.6 425 75.8
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 1.2e-181 640.2 424 77.4
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 4.4e-181 638.3 423 74.7
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 4.9e-180 634.8 425 75.5
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 1.1e-179 633.6 425 75.3
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 1.4e-179 633.3 413 78.5
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.0e-177 627.1 426 75.8
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.5e-176 622.5 416 75.2
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 2.8e-175 619.0 475 70.5
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 8.9e-174 614.0 422 76.1
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.0e-173 612.8 417 74.8
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 9.2e-171 604.0 425 70.6
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 1.0e-169 600.5 422 69.9
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-169 600.1 416 71.6
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 1.1e-168 597.0 402 75.4
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.3e-168 595.1 412 71.1
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 5.6e-168 594.7 364 81.0
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 7.3e-168 594.3 352 85.5
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.6e-167 593.2 424 69.6
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.1e-167 592.8 353 81.9
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 7.0e-163 577.8 410 69.8
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-161 573.9 413 70.7
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 3.9e-161 572.0 340 84.1
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 1.6e-159 566.6 410 69.5
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 4.7e-159 565.1 430 66.7
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 1.4e-158 563.5 415 65.8
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 1.8e-158 563.1 344 80.2
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 5.2e-158 561.6 360 77.8
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 5.8e-157 558.1 415 70.8
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.7e-154 549.3 431 66.4
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.9e-153 545.4 421 64.8
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 3.1e-150 535.8 311 84.2
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-145 520.4 419 63.7
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 2.4e-139 499.6 423 60.0
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 6.0e-138 495.0 303 81.2
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.6e-135 486.9 412 62.4
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.9e-131 473.4 281 84.0
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 8.7e-129 464.5 286 78.7
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 5.3e-126 455.3 435 56.8
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 1.3e-124 450.7 442 56.8
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 2.6e-117 426.4 237 89.0
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 1.1e-110 404.4 429 49.4
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 1.7e-103 380.6 254 72.8
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 6.5e-100 368.6 435 46.7
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 3.3e-88 329.7 465 43.7
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 3.2e-83 313.2 412 43.0
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 6.3e-79 298.9 199 76.4
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 5.4e-78 295.8 171 83.0
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 1.4e-70 271.2 162 79.6
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.4e-70 271.2 239 60.3
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 3.8e-68 263.1 168 76.8
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.3e-63 248.1 166 75.3
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 2.2e-63 247.3 253 58.9
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 5.2e-57 226.1 158 74.1
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 2.9e-55 220.3 161 68.3
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 1.2e-34 151.8 96 79.2
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 9.9e-32 142.1 86 80.2
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 3.2e-30 137.1 86 79.1
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 7.1e-30 136.0 126 61.9
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 1.6e-26 124.8 217 37.3
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.8e-23 113.6 72 76.4
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 2.1e-18 97.8 58 77.6
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 3.6e-18 97.1 94 58.5
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 3.6e-18 97.1 129 45.0
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 8.1e-18 95.9 55 81.8
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 1.2e-16 92.0 184 36.4
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 9.3e-14 82.4 48 83.3
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 1.6e-13 81.6 55 67.3
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 5.6e-11 73.2 230 27.8
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 8.1e-10 69.3 47 72.3
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 4.5e-08 63.5 38 78.9
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 5.8e-08 63.2 94 41.5
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 1.0e-07 62.4 42 71.4
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.0e-07 62.4 70 48.6
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 5.5e-06 56.6 32 81.2
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 9.3e-06 55.8 46 60.9


User provided reference genes

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