Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 2.8e-64 248.4 123 100.0
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 3.7e-32 141.7 71 95.8
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 1.1e-31 140.2 78 87.2
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.1e-31 140.2 71 94.4
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.1e-31 140.2 71 94.4
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 3.1e-31 138.7 71 93.0
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 6.9e-31 137.5 71 91.5
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 9.0e-31 137.1 70 91.4
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.2e-30 136.7 71 93.0
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 2.0e-30 136.0 71 88.7
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 3.4e-30 135.2 71 88.7
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 3.4e-30 135.2 71 88.7
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 3.4e-30 135.2 71 88.7
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 3.4e-30 135.2 71 88.7
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 3.4e-30 135.2 71 87.3
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 7.6e-30 134.0 71 87.3
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 7.6e-30 134.0 70 91.4
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 7.6e-30 134.0 71 85.9
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.0e-29 133.7 71 87.3
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 1.0e-29 133.7 71 85.9
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 1.0e-29 133.7 71 87.3
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 1.3e-29 133.3 76 81.6
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 1.7e-29 132.9 71 87.3
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 1.7e-29 132.9 71 87.3
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.7e-29 132.9 70 90.0
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 1.7e-29 132.9 71 85.9
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 1.7e-29 132.9 71 88.7
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 1.7e-29 132.9 71 88.7
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 1.7e-29 132.9 71 88.7
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 2.2e-29 132.5 71 87.3
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 2.2e-29 132.5 71 85.9
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 2.2e-29 132.5 71 87.3
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 2.2e-29 132.5 71 84.5
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 2.2e-29 132.5 71 87.3
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 2.2e-29 132.5 71 87.3
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 2.2e-29 132.5 71 90.1
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 2.2e-29 132.5 71 85.9
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 2.9e-29 132.1 71 87.3
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.9e-29 132.1 71 87.3
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.9e-29 132.1 71 85.9
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 3.8e-29 131.7 71 85.9
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 3.8e-29 131.7 71 85.9
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 4.9e-29 131.3 71 85.9
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 4.9e-29 131.3 70 87.1
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 4.9e-29 131.3 70 87.1
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 4.9e-29 131.3 70 87.1
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 4.9e-29 131.3 70 87.1
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 4.9e-29 131.3 70 87.1
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 4.9e-29 131.3 70 87.1
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 4.9e-29 131.3 71 85.9
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 6.5e-29 131.0 71 85.9
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 6.5e-29 131.0 71 85.9
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 6.5e-29 131.0 71 85.9
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 6.5e-29 131.0 70 88.6
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 6.5e-29 131.0 71 85.9
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 6.5e-29 131.0 71 85.9
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 6.5e-29 131.0 71 84.5
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 1.1e-28 130.2 71 85.9
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.4e-28 129.8 71 85.9
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 2.5e-28 129.0 71 84.5
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 2.5e-28 129.0 71 83.1
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 2.5e-28 129.0 71 84.5
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 2.5e-28 129.0 80 76.2
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 3.2e-28 128.6 71 84.5
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 3.2e-28 128.6 70 87.1
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 3.2e-28 128.6 71 85.9
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 3.2e-28 128.6 71 85.9
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 4.2e-28 128.3 71 81.7
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 5.5e-28 127.9 69 85.5
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 5.5e-28 127.9 71 84.5
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 7.1e-28 127.5 71 83.1
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 7.1e-28 127.5 71 83.1
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 9.3e-28 127.1 71 83.1
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 3.5e-27 125.2 71 81.7
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 3.5e-27 125.2 71 81.7
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 4.6e-27 124.8 71 81.7
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 4.6e-27 124.8 71 81.7
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 4.6e-27 124.8 71 81.7
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 1.0e-26 123.6 71 80.3
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.0e-26 123.6 71 80.3
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 1.3e-26 123.2 71 78.9
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 1.8e-26 122.9 71 78.9
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 1.8e-26 122.9 71 81.7
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 3.0e-26 122.1 105 63.8
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 6.7e-26 120.9 71 80.3
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 6.7e-26 120.9 71 78.9
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 6.7e-26 120.9 90 68.9
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.5e-25 119.8 62 87.1
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 1.9e-25 119.4 69 85.5
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 2.5e-25 119.0 63 84.1
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 2.5e-25 119.0 71 77.5
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 4.3e-25 118.2 70 75.7
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 5.7e-25 117.9 71 73.2
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 1.3e-24 116.7 69 76.8
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 2.8e-24 115.5 77 71.4
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.1e-23 113.6 71 74.6
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 1.4e-23 113.2 71 73.2
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 6.9e-23 110.9 71 69.0
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 1.2e-22 110.2 69 73.9
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 5.5e-20 101.3 49 98.0
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 1.2e-19 100.1 71 63.4
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 5.1e-18 94.7 158 39.9
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 1.5e-17 93.2 51 82.4
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 1.9e-17 92.8 49 83.7
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 2.5e-17 92.4 50 86.0
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 3.3e-17 92.0 56 75.0
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 4.3e-17 91.7 53 77.4
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 1.7e-16 89.7 51 80.4
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 3.7e-16 88.6 50 82.0
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 5.3e-15 84.7 44 81.8
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 5.9e-14 81.3 62 61.3
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.0e-13 80.5 65 60.0
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 1.7e-13 79.7 69 52.2
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 1.1e-12 77.0 48 75.0
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 1.1e-12 77.0 64 51.6
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.1e-12 77.0 56 64.3
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 1.9e-12 76.3 38 84.2
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 3.2e-12 75.5 47 72.3
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.2e-12 75.5 51 68.6
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 5.5e-12 74.7 71 49.3
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 5.5e-12 74.7 69 58.0
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 2.1e-11 72.8 38 84.2
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 3.6e-11 72.0 43 76.7
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 4.7e-11 71.6 38 84.2
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 3.0e-10 68.9 37 81.1
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 6.7e-10 67.8 37 83.8
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 6.7e-10 67.8 43 72.1
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.0e-09 66.2 34 88.2
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 9.7e-09 63.9 43 72.1
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.7e-08 63.2 36 80.6
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.7e-08 63.2 36 80.6
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.7e-08 63.2 36 80.6


User provided reference genes

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