Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 5.9e-53 210.7 114 100.0
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 2.3e-28 129.0 99 76.8
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 3.9e-28 128.3 102 69.6
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.5e-27 126.3 99 74.7
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 8.9e-25 117.1 108 58.3
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 1.2e-24 116.7 101 62.4
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 2.6e-24 115.5 102 58.8
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 3.4e-24 115.2 102 59.8
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 7.6e-24 114.0 97 61.9
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 3.8e-23 111.7 101 61.4
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.1e-22 110.2 88 60.2
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.9e-22 109.4 103 59.2
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 2.4e-22 109.0 88 59.1
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 2.4e-22 109.0 102 54.9
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 1.2e-21 106.7 97 56.7
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.2e-21 106.7 102 53.9
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 1.6e-21 106.3 102 55.9
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 2.1e-21 105.9 80 70.0
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 2.1e-21 105.9 87 59.8
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 2.7e-21 105.5 111 54.1
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 3.5e-21 105.1 82 61.0
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 6.0e-21 104.4 82 59.8
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 7.8e-21 104.0 79 69.6
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.3e-20 103.2 91 61.5
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 1.7e-20 102.8 104 56.7
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 1.7e-20 102.8 78 65.4
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 2.3e-20 102.4 101 56.4
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 5.1e-20 101.3 112 51.8
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 8.7e-20 100.5 100 55.0
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 8.7e-20 100.5 85 60.0
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 8.7e-20 100.5 103 55.3
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 1.1e-19 100.1 78 69.2
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 4.3e-19 98.2 79 65.8
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 5.6e-19 97.8 91 54.9
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 5.6e-19 97.8 85 60.0
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 7.3e-19 97.4 92 54.3
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 7.3e-19 97.4 92 54.3
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 2.8e-18 95.5 96 53.1
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 3.6e-18 95.1 103 53.4
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 6.2e-18 94.4 77 68.8
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 8.1e-18 94.0 73 61.6
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 8.1e-18 94.0 99 52.5
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 1.4e-17 93.2 84 54.8
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 1.4e-17 93.2 92 54.3
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 3.1e-17 92.0 101 55.4
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.3e-17 91.3 87 55.2
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.3e-17 91.3 87 55.2
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.9e-17 90.9 87 55.2
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.9e-17 90.9 87 55.2
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 1.2e-16 90.1 89 53.9
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.2e-16 90.1 89 53.9
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.2e-16 90.1 89 53.9
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 1.5e-16 89.7 83 51.8
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.5e-16 89.7 100 57.0
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 1.5e-16 89.7 83 54.2
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 2.0e-16 89.4 95 49.5
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 2.0e-16 89.4 89 51.7
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 5.8e-16 87.8 101 50.5
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 7.6e-16 87.4 101 46.5
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 7.6e-16 87.4 80 58.8
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 9.9e-16 87.0 95 49.5
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 9.9e-16 87.0 75 57.3
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 9.9e-16 87.0 85 52.9
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 1.3e-15 86.7 74 63.5
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.3e-15 86.7 79 57.0
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.3e-15 86.7 79 57.0
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.7e-15 86.3 95 47.4
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 2.2e-15 85.9 80 53.8
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 2.2e-15 85.9 84 48.8
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 3.8e-15 85.1 104 46.2
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 4.9e-15 84.7 81 55.6
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 6.4e-15 84.3 74 58.1
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 8.4e-15 84.0 74 55.4
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 8.4e-15 84.0 91 48.4
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 1.1e-14 83.6 80 51.2
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 1.1e-14 83.6 73 57.5
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 1.1e-14 83.6 82 56.1
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 1.9e-14 82.8 74 56.8
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 2.4e-14 82.4 77 51.9
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 1.2e-13 80.1 75 57.3
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 1.6e-13 79.7 77 50.6
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 6.0e-13 77.8 91 48.4
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 7.9e-13 77.4 61 63.9
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 1.3e-12 76.6 100 46.0
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 1.8e-12 76.3 61 65.6
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 3.0e-12 75.5 73 57.5
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 3.0e-12 75.5 79 55.7
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 3.9e-12 75.1 102 44.1
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 5.1e-12 74.7 76 55.3
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 5.1e-12 74.7 61 62.3
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 5.1e-12 74.7 61 62.3
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 8.7e-12 73.9 60 58.3
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 1.5e-11 73.2 97 45.4
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 1.5e-11 73.2 61 54.1
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 1.9e-11 72.8 128 35.9
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 1.9e-11 72.8 78 55.1
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 3.3e-11 72.0 84 48.8
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 3.3e-11 72.0 84 52.4
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 2.1e-10 69.3 76 52.6
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 2.8e-10 68.9 75 48.0
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 6.2e-10 67.8 79 49.4
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 8.1e-10 67.4 74 51.4
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 8.1e-10 67.4 74 51.4
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 1.1e-09 67.0 56 64.3
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 1.4e-09 66.6 69 55.1
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 9.0e-09 63.9 68 51.5
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 1.7e-07 59.7 50 60.0
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 2.9e-07 58.9 81 42.0
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 1.4e-06 56.6 50 54.0
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 3.2e-06 55.5 75 48.0
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 3.2e-06 55.5 75 48.0
MD07G1101100 Malus domestica HOM05D006948 ORTHO05D008703 9.3e-06 53.9 46 58.7


User provided reference genes

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