Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 4.3e-164 581.3 296 100.0
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 3.1e-85 319.3 304 62.2
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 1.1e-82 310.8 299 62.9
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 7.1e-66 255.0 309 52.8
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 8.7e-64 248.1 201 69.7
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 5.7e-63 245.4 278 52.9
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.1e-62 243.4 163 79.1
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 3.8e-59 232.6 313 48.2
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 5.0e-59 232.3 327 48.6
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 1.1e-58 231.1 308 49.7
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 2.5e-58 229.9 175 69.7
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 4.2e-58 229.2 250 54.4
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 9.3e-58 228.0 179 67.0
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 1.2e-57 227.6 180 68.3
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 7.9e-57 224.9 289 48.1
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 1.0e-56 224.6 223 58.3
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 2.3e-56 223.4 254 51.6
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 3.9e-56 222.6 255 55.7
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.9e-56 222.6 298 48.3
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 5.1e-56 222.2 250 51.6
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 6.7e-56 221.9 179 66.5
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 1.1e-55 221.1 168 69.0
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 1.9e-55 220.3 249 53.0
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 1.9e-55 220.3 171 68.4
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 5.7e-55 218.8 170 68.2
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 2.2e-54 216.9 316 44.9
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 4.8e-54 215.7 207 59.9
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 6.3e-54 215.3 273 48.7
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 8.2e-54 214.9 176 64.8
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 8.2e-54 214.9 302 46.7
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 1.8e-53 213.8 179 65.4
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 3.1e-53 213.0 272 48.9
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 3.1e-53 213.0 234 52.6
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 3.1e-53 213.0 304 46.1
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 4.1e-53 212.6 274 50.4
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 4.1e-53 212.6 215 57.7
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 4.1e-53 212.6 252 49.2
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 4.1e-53 212.6 171 66.1
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 4.1e-53 212.6 172 67.4
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 9.1e-53 211.5 200 60.5
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 9.1e-53 211.5 238 52.5
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 1.5e-52 210.7 173 67.1
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 2.6e-52 209.9 202 59.4
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 2.6e-52 209.9 187 63.1
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 2.6e-52 209.9 300 46.3
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 3.4e-52 209.5 215 56.3
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 5.9e-52 208.8 285 47.4
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 5.9e-52 208.8 180 62.2
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 1.3e-51 207.6 168 62.5
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 1.3e-51 207.6 185 62.2
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.3e-51 207.6 165 65.5
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.7e-51 207.2 287 47.7
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 2.2e-51 206.8 202 54.5
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 3.8e-51 206.1 285 47.4
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 3.8e-51 206.1 202 57.9
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 1.4e-50 204.1 176 62.5
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 7.2e-50 201.8 182 63.2
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 2.3e-48 196.8 176 59.1
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 6.7e-48 195.3 173 61.3
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 5.7e-47 192.2 213 56.3
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 7.4e-47 191.8 207 53.6
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 6.3e-46 188.7 170 60.0
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 1.4e-45 187.6 193 55.4
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 1.8e-45 187.2 160 62.5
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.8e-45 187.2 160 62.5
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 1.8e-45 187.2 160 62.5
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.2e-44 184.5 170 58.8
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 2.0e-44 183.7 167 58.7
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 2.0e-44 183.7 219 51.1
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 2.0e-44 183.7 219 51.1
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 3.4e-44 183.0 170 60.0
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 3.4e-44 183.0 312 41.7
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 5.9e-44 182.2 242 48.8
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 1.0e-43 181.4 301 41.5
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 2.2e-43 180.3 227 49.8
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 6.5e-43 178.7 170 57.6
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 1.1e-42 177.9 239 46.4
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.1e-42 177.9 145 66.2
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 1.9e-42 177.2 165 58.2
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 2.5e-42 176.8 157 57.3
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 3.2e-42 176.4 224 50.4
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 4.2e-42 176.0 170 58.2
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 4.2e-42 176.0 153 60.8
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 1.6e-41 174.1 152 63.2
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 2.1e-41 173.7 244 46.3
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 4.7e-41 172.6 224 49.6
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 1.0e-40 171.4 220 48.6
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 2.0e-39 167.2 194 50.0
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 3.3e-39 166.4 170 55.3
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 3.1e-37 159.8 244 44.3
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 3.1e-37 159.8 112 72.3
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 9.1e-37 158.3 112 71.4
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 2.6e-36 156.8 112 71.4
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 8.5e-35 151.8 112 70.5
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 3.2e-34 149.8 181 48.1
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 1.2e-33 147.9 117 63.2
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 5.2e-32 142.5 280 36.8
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 6.7e-32 142.1 163 48.5
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 4.4e-31 139.4 125 60.8
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 1.3e-30 137.9 201 43.8
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 3.1e-29 133.3 116 62.1
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 3.8e-27 126.3 172 44.2
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 3.6e-25 119.8 144 52.8
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 9.1e-21 105.1 67 74.6
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 2.3e-19 100.5 118 43.2
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 1.0e-16 91.7 200 36.0
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.8e-16 90.9 82 59.8
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 3.4e-15 86.7 151 35.8
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 6.3e-14 82.4 86 58.1
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 5.0e-11 72.8 49 77.6
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 1.5e-10 71.2 64 57.8
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 3.6e-09 66.6 142 33.8
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 5.2e-08 62.8 66 48.5
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 8.9e-08 62.0 281 25.6
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 5.7e-07 59.3 42 73.8


User provided reference genes

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