Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.3e-210 736.1 373 100.0
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 3.1e-135 485.7 375 69.3
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 6.0e-110 401.7 386 60.6
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-105 387.5 376 57.4
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-105 387.5 376 57.4
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.7e-104 382.5 385 55.6
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 4.1e-103 379.0 394 55.1
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.0e-97 360.1 382 51.3
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 7.5e-97 358.2 384 53.6
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 6.4e-96 355.1 382 50.5
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 6.0e-94 348.6 374 51.6
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.5e-92 343.2 373 55.0
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.3e-92 342.8 373 54.7
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 9.5e-92 341.3 381 50.9
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 3.6e-91 339.3 383 53.3
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.1e-90 337.8 385 52.7
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 3.1e-90 336.3 387 50.6
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.8e-90 335.1 378 50.0
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 4.1e-87 325.9 385 49.9
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.2e-87 324.7 375 51.5
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.1e-86 323.6 385 49.9
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.3e-85 320.9 380 50.3
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.1e-84 317.8 383 49.1
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 4.3e-84 315.8 383 48.8
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.2e-83 314.3 380 47.9
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 7.6e-81 305.1 334 52.7
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.6e-78 297.4 377 46.9
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.6e-78 295.8 365 48.2
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 3.0e-77 293.1 411 43.1
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 6.2e-75 285.4 384 45.8
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 5.3e-74 282.3 393 45.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.5e-73 280.8 384 45.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.6e-73 280.0 396 45.5
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 6.4e-72 275.4 313 49.8
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.9e-71 273.9 400 45.5
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 3.9e-69 266.2 382 44.0
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 9.6e-68 261.5 379 46.2
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.8e-67 260.0 386 44.3
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 8.1e-67 258.5 382 44.5
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.5e-65 254.2 414 40.1
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.6e-65 253.4 338 47.3
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 4.5e-65 252.7 379 45.6
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 4.5e-65 252.7 389 42.7
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.3e-64 251.1 384 43.8
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.9e-64 250.0 393 44.8
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 6.4e-64 248.8 383 42.3
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 8.4e-64 248.4 393 42.0
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 8.4e-64 248.4 403 41.7
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 1.1e-63 248.1 368 45.9
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 2.4e-63 246.9 421 39.2
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.6e-62 244.2 416 39.7
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 4.6e-62 242.7 410 41.7
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 3.9e-61 239.6 384 41.9
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.1e-61 239.2 378 41.8
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.5e-60 237.7 413 41.2
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.5e-60 237.7 381 41.5
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.6e-60 235.7 399 41.6
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 5.6e-60 235.7 418 38.5
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-59 234.2 420 38.3
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 2.1e-59 233.8 385 41.6
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 3.7e-59 233.0 375 43.2
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 4.8e-59 232.6 391 43.2
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.4e-58 231.1 400 41.2
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.8e-58 230.7 426 37.6
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.0e-58 229.6 263 48.7
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 9.0e-58 228.4 385 39.7
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 9.0e-58 228.4 400 41.2
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 2.0e-57 227.3 384 39.6
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 4.5e-57 226.1 384 40.6
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-56 224.6 373 40.8
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.3e-56 224.6 423 39.2
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.2e-56 223.8 383 41.5
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 2.9e-56 223.4 427 38.9
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 6.5e-56 222.2 381 40.2
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.9e-55 220.7 392 40.1
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 2.5e-55 220.3 412 40.8
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 3.2e-55 219.9 382 39.8
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.2e-55 219.9 408 37.7
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.1e-55 218.8 404 37.9
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 9.3e-55 218.4 335 42.4
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.2e-54 218.0 381 40.4
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 3.5e-54 216.5 385 40.0
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.3e-53 213.8 407 37.3
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 4.8e-51 206.1 380 40.5
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.3e-51 205.7 378 39.9
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 6.3e-51 205.7 409 39.1
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 8.2e-51 205.3 385 39.0
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 6.9e-50 202.2 415 36.6
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.5e-49 201.1 375 39.2
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 3.4e-49 199.9 408 37.0
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.9e-48 196.8 412 36.7
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 3.8e-48 196.4 329 40.7
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 8.5e-48 195.3 324 41.4
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.1e-47 194.9 379 36.4
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.9e-47 194.1 409 35.5
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.9e-47 194.1 414 35.3
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 3.6e-46 189.9 373 36.7
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.1e-44 184.9 385 37.9
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.1e-44 184.9 408 35.0
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.1e-44 184.9 381 37.3
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 4.1e-42 176.4 407 35.9
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 4.1e-42 176.4 407 35.9
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 4.1e-42 176.4 406 35.5
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 5.3e-42 176.0 411 31.9
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.2e-41 174.9 405 35.1
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.2e-41 174.9 407 35.9
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 3.4e-41 173.3 279 41.6
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 7.7e-41 172.2 407 35.9
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 7.2e-39 165.6 413 32.4
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 2.7e-38 163.7 413 32.4
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 3.6e-38 163.3 389 33.9
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 6.1e-38 162.5 417 32.1
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 3.0e-37 160.2 290 39.0
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.7e-35 154.5 250 41.6
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 6.3e-35 152.5 258 42.2
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.8e-34 151.0 414 32.1
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 9.1e-34 148.7 417 32.6
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.5e-33 147.9 414 32.6
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 5.9e-33 146.0 198 46.0
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.3e-32 144.8 257 37.4
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 2.2e-32 144.1 236 39.0
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 2.9e-32 143.7 251 37.8
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.9e-31 141.0 256 38.3
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 3.2e-31 140.2 382 30.4
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 9.4e-31 138.7 243 36.6
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 2.7e-30 137.1 502 27.9
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.7e-30 137.1 151 58.3
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.4e-29 134.8 398 31.9
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.5e-28 131.3 414 30.0
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.0e-28 131.0 242 38.8
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 7.4e-28 129.0 230 40.4
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 7.4e-28 129.0 242 37.2
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 9.7e-28 128.6 233 34.8
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.2e-27 127.5 366 31.7
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 2.8e-27 127.1 247 36.0
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 6.3e-27 125.9 225 34.2
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 6.3e-27 125.9 248 36.7
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.2e-27 125.6 229 34.5
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.1e-26 125.2 260 36.5
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.1e-26 125.2 247 35.2
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.4e-26 124.8 254 33.5
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 4.1e-26 123.2 218 33.9
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 5.3e-26 122.9 425 29.4
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 9.1e-26 122.1 200 39.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.6e-25 121.3 225 34.7
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 2.6e-25 120.6 213 36.2
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 4.5e-25 119.8 226 36.3
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.9e-25 119.4 261 33.0
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 5.9e-25 119.4 252 33.3
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 2.9e-24 117.1 220 37.7
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.9e-24 117.1 250 35.2
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 8.5e-24 115.5 245 33.5
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.1e-23 115.2 257 35.0
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.5e-23 114.8 214 36.9
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 9.4e-23 112.1 330 29.7
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 6.1e-22 109.4 248 33.1
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.7e-21 105.9 256 33.6
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 4.1e-18 96.7 92 50.0
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.7e-17 92.4 123 42.3
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.8e-16 90.1 102 43.1
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 3.8e-16 90.1 102 43.1
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.1e-15 88.6 143 41.3
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.5e-15 87.4 136 36.8
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.7e-14 84.0 135 34.8
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.0e-13 82.0 142 32.4
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.4e-12 76.6 223 32.7
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 9.1e-10 68.9 48 60.4
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 1.3e-08 65.1 139 35.3
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 1.5e-07 61.6 181 30.4
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 1.2e-06 58.5 50 54.0
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 8.0e-06 55.8 118 34.7


User provided reference genes

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