Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 1.1e-153 546.6 263 100.0
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 5.9e-104 381.3 257 68.5
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 2.5e-102 375.9 253 69.6
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 3.6e-101 372.1 258 69.8
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 1.4e-94 350.1 256 63.7
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 1.9e-94 349.7 236 69.9
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 2.5e-94 349.4 256 65.2
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 3.2e-94 349.0 259 64.1
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 7.2e-94 347.8 256 63.3
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 1.6e-93 346.7 259 62.2
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 1.5e-91 340.1 252 62.7
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 2.8e-90 335.9 271 59.4
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 3.7e-90 335.5 267 61.8
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 4.8e-90 335.1 257 62.3
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 6.3e-90 334.7 273 60.1
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 3.5e-88 328.9 249 61.8
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 4.5e-88 328.6 259 58.7
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.7e-87 326.6 258 60.1
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 3.8e-87 325.5 263 60.5
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 7.2e-86 321.2 256 61.3
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 1.6e-85 320.1 256 59.8
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.0e-84 317.4 257 60.3
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 1.8e-84 316.6 263 58.2
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 1.3e-82 310.5 261 55.2
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 1.7e-82 310.1 263 55.1
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 2.2e-82 309.7 262 55.3
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 2.8e-82 309.3 285 53.0
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 4.8e-82 308.5 257 57.2
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 8.2e-82 307.8 259 58.3
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 1.8e-81 306.6 260 55.8
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 3.1e-81 305.8 265 55.5
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 7.0e-81 304.7 256 56.6
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 2.7e-80 302.8 258 57.8
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 1.3e-79 300.4 257 52.5
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 3.8e-79 298.9 257 55.6
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 1.5e-78 297.0 256 56.6
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 2.5e-78 296.2 266 53.8
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.5e-78 296.2 249 57.4
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 5.5e-78 295.0 249 57.8
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 9.4e-78 294.3 255 57.3
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.2e-77 293.9 249 57.0
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 1.2e-77 293.9 262 54.2
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.1e-77 293.1 249 57.4
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 3.6e-77 292.4 267 54.7
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 4.7e-77 292.0 260 55.0
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 4.7e-77 292.0 264 54.2
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 6.1e-77 291.6 251 56.6
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 1.0e-76 290.8 257 54.1
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.0e-76 290.8 264 54.5
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 1.8e-76 290.0 257 53.3
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 3.0e-76 289.3 268 53.7
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 5.2e-76 288.5 264 54.2
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 2.0e-75 286.6 264 53.8
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 2.0e-75 286.6 252 55.6
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 3.4e-75 285.8 260 53.8
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 4.4e-75 285.4 259 52.5
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 5.7e-75 285.0 259 54.4
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 7.5e-75 284.6 264 53.8
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.7e-74 283.5 245 53.9
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 2.2e-74 283.1 255 54.1
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 2.8e-74 282.7 252 53.6
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 6.3e-74 281.6 258 51.9
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 8.3e-74 281.2 257 52.1
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 3.1e-73 279.3 265 52.1
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 4.1e-73 278.9 256 54.7
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 9.1e-73 277.7 266 52.3
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 9.1e-73 277.7 260 53.5
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 1.2e-72 277.3 266 52.3
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 1.6e-72 276.9 265 52.1
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 2.0e-72 276.6 267 52.1
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 4.5e-72 275.4 262 53.1
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 5.9e-72 275.0 271 51.7
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 5.9e-72 275.0 274 49.6
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 1.0e-71 274.2 257 50.6
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 1.3e-71 273.9 254 51.6
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 3.8e-71 272.3 250 56.0
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 3.8e-71 272.3 264 53.4
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 6.5e-71 271.6 248 54.8
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 8.6e-71 271.2 265 51.3
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 1.5e-70 270.4 249 55.0
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 1.2e-69 267.3 237 56.1
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 1.6e-69 266.9 263 52.1
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 2.3e-68 263.1 263 48.7
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 4.0e-68 262.3 262 48.9
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 1.5e-67 260.4 267 48.3
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 4.4e-67 258.8 235 54.9
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 9.8e-67 257.7 270 49.3
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 5.4e-65 251.9 236 54.7
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 9.2e-65 251.1 233 54.9
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 2.7e-64 249.6 263 49.4
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 3.5e-64 249.2 266 49.2
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 4.5e-64 248.8 232 54.3
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 3.8e-63 245.7 214 53.7
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 4.3e-62 242.3 258 47.7
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 8.0e-61 238.0 203 53.7
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 4.0e-60 235.7 212 47.6
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 6.6e-55 218.4 163 58.3
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.1e-52 211.1 241 46.1
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 6.8e-52 208.4 253 41.9
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 1.9e-49 200.3 141 61.0
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 9.2e-49 198.0 208 50.5
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 5.2e-44 182.2 210 45.7
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.5e-43 180.6 174 52.3
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 2.4e-41 173.3 245 41.6
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 1.5e-38 164.1 196 41.3
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 1.9e-38 163.7 220 42.3
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 2.5e-38 163.3 203 45.8
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 3.4e-35 152.9 251 38.6
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 1.7e-34 150.6 224 37.9
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 2.9e-34 149.8 254 38.6
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 7.1e-33 145.2 251 35.1
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 3.9e-31 139.4 247 36.0
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 1.1e-28 131.3 87 64.4
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 6.9e-28 128.6 220 33.6
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 5.8e-27 125.6 132 50.8
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 2.2e-26 123.6 125 55.2
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 3.2e-25 119.8 172 39.5
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 4.3e-22 109.4 102 53.9
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 1.1e-20 104.8 114 47.4
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 6.9e-20 102.1 93 58.1
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 1.3e-18 97.8 91 54.9
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 1.7e-10 70.9 55 60.0
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 2.2e-10 70.5 125 32.8
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 3.2e-09 66.6 267 23.2
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 1.6e-08 64.3 65 53.8
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 4.6e-08 62.8 220 28.2
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 3.9e-07 59.7 104 34.6
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 8.7e-07 58.5 252 24.2
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 1.1e-06 58.2 265 25.3
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 1.5e-06 57.8 261 25.3
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 1.9e-06 57.4 257 24.5
QL02p053561 Quercus lobata HOM05D006790 ORTHO05D007715 1.9e-06 57.4 160 26.9
CARHR059630 Cardamine hirsuta HOM05D006790 ORTHO05D007715 2.5e-06 57.0 139 28.1
CSS0021359 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 3.3e-06 56.6 119 32.8
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 3.3e-06 56.6 206 24.3
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 7.4e-06 55.5 257 23.7


User provided reference genes

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