Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 2162.9 1087 100.0
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1859.0 1082 85.1
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1833.9 1101 82.7
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1797.3 1149 78.6
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1777.7 1104 79.4
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1747.3 1073 80.7
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1746.9 1083 78.6
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1745.3 1076 79.9
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1718.7 1083 77.3
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1714.5 1080 78.1
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1713.4 1082 77.1
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1706.4 1080 77.6
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1704.9 1074 77.7
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1703.3 1077 77.8
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1701.4 1093 76.8
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1700.3 1080 77.1
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1695.2 1080 77.0
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1684.1 1084 76.0
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1681.0 1084 75.9
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1674.1 1083 75.5
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1670.2 1092 75.0
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1668.7 1111 73.5
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1667.9 1079 75.3
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1667.1 1089 74.6
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1660.6 1086 75.1
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1654.4 1088 74.4
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1652.1 1086 74.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1650.6 1087 74.5
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1645.6 1094 73.9
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1642.9 1086 74.0
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1639.4 1082 74.6
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1636.3 1090 74.2
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1635.5 1084 73.5
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1631.3 1077 73.4
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1628.6 1087 73.1
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1627.5 1084 73.2
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1620.1 1077 73.6
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1619.0 1088 72.7
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1615.1 1081 73.2
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1614.4 1077 72.7
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1610.9 1077 72.2
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1610.5 1089 72.9
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1609.0 1081 72.5
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1608.6 1081 72.9
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1608.2 1085 73.5
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1607.4 1084 72.8
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1607.0 1068 73.3
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1606.7 1082 71.8
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1605.5 1081 72.9
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1604.3 1081 73.1
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1602.0 1077 72.9
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1599.7 1090 71.9
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1597.0 1085 72.4
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1588.9 1083 72.0
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1588.2 1107 70.7
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1587.4 1086 72.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1585.9 1106 70.6
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1584.7 1084 71.0
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1584.3 1169 68.4
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1583.9 1081 71.2
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1581.2 1081 71.1
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1580.5 1090 71.4
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1580.1 1085 72.2
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1578.1 1081 71.2
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1577.4 1085 72.1
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1168 68.2
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1077 71.4
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1573.5 1076 71.1
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1570.1 1089 70.3
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1569.3 1085 71.3
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1566.2 1082 69.8
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1565.8 1086 71.4
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1104 70.7
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1562.4 1085 71.1
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1562.4 1085 71.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1090 71.2
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1560.4 1077 71.0
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1558.1 1084 70.6
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1557.7 1080 70.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1557.7 1080 70.4
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1557.3 1085 70.9
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1557.0 1080 72.0
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1554.3 1077 70.6
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1553.5 1077 70.7
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1552.7 1074 70.9
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1076 70.4
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1548.5 993 75.1
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1545.8 1080 70.3
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1541.2 1096 70.1
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1539.2 1076 69.9
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1539.2 1016 73.5
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1538.9 1081 69.3
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1538.5 1076 69.9
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1538.5 1076 69.9
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1536.9 1076 69.9
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1536.9 1076 69.9
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1535.8 1076 69.8
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1533.5 1079 69.0
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1528.1 1068 70.6
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1526.1 1076 69.6
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1511.1 1105 66.9
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1510.7 1082 68.4
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1497.6 1052 69.4
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1478.8 1086 67.8
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1473.0 1103 66.3
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1460.3 998 72.8
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1459.9 982 72.5
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1457.2 1076 65.7
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1428.7 1098 63.8
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1377.8 1080 65.2
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1356.3 1083 64.6
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1226.5 791 76.4
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1186.8 1085 53.9
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1174.5 694 83.0
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1162.1 1075 54.1
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1148.3 1084 53.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1141.7 1117 52.1
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1137.5 676 82.1
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1132.5 717 78.2
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1125.2 1078 52.2
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1104.7 752 72.5
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 7.6e-299 1030.8 836 60.8
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.9e-273 946.4 817 59.2
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 9.4e-265 917.5 613 75.5
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.0e-255 887.5 508 85.8
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.2e-251 874.0 634 71.3
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 8.0e-248 861.3 953 48.3
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 2.0e-227 793.5 604 69.4
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 6.6e-226 788.5 985 46.8
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 4.7e-224 782.3 631 60.4
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.6e-163 579.7 430 68.4
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.1e-156 558.5 308 84.4
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 8.0e-131 472.6 383 63.2
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.8e-130 469.2 313 73.5
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 3.5e-78 297.7 291 52.9
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 3.5e-70 271.2 241 56.8
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 2.1e-62 245.4 136 80.9
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.9e-61 241.1 205 60.0
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.5e-52 212.6 138 68.8
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 1.6e-38 166.0 133 58.6
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 5.3e-34 151.0 160 52.5
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.5e-31 142.9 73 90.4
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 2.5e-31 142.1 156 48.7
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 6.3e-27 127.5 97 66.0
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 8.2e-27 127.1 106 58.5
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.8e-26 125.9 88 67.0
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 1.0e-13 83.6 145 37.9
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.8e-13 82.8 73 47.9
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 4.0e-13 81.6 49 71.4
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 7.0e-10 70.9 47 74.5
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.7e-08 66.2 33 90.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 3.3e-07 62.0 39 71.8
Nitab4.5_0001494g0120 Nicotiana tabacum HOM05D000418 ORTHO05D000317 2.8e-06 58.9 240 24.6


User provided reference genes

Program Settings