Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27881 Avicennia marina HOM05D002321 ORTHO05D006445 2.1e-91 339.0 169 100.0
SGA_v2.0_scaffold131G34422 Striga asiatica HOM05D002321 ORTHO05D006445 7.0e-50 201.1 159 67.3
Migut.B00717 Erythranthe guttata HOM05D002321 ORTHO05D006445 2.0e-49 199.5 154 67.5
Oeu016640.1 Olea europaea HOM05D002321 ORTHO05D006445 1.3e-48 196.8 151 65.6
Dinv29681 Davidia involucrata HOM05D002321 ORTHO05D006445 1.8e-45 186.4 152 69.1
Actinidia26198 Actinidia chinensis HOM05D002321 ORTHO05D006445 1.3e-43 180.3 147 65.3
Dinv29637 Davidia involucrata HOM05D002321 ORTHO05D006445 2.4e-42 176.0 157 65.0
Nitab4.5_0000460g0050 Nicotiana tabacum HOM05D002321 ORTHO05D006445 1.6e-41 173.3 153 66.0
Lj5A285T49 Lonicera japonica HOM05D002321 ORTHO05D006445 4.5e-41 171.8 147 63.3
Nitab4.5_0010848g0010 Nicotiana tabacum HOM05D002321 ORTHO05D006445 1.0e-40 170.6 154 64.9
Peaxi162Scf00071g00002 Petunia axillaris HOM05D002321 ORTHO05D006445 3.8e-40 168.7 158 61.4
CSS0022296 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D006445 8.6e-40 167.5 138 63.8
Hma1.2p1_0157F.1_g069140 Hydrangea macrophylla HOM05D002321 ORTHO05D006445 3.3e-39 165.6 150 62.7
Lj9A259T47 Lonicera japonica HOM05D002321 ORTHO05D006445 4.2e-39 165.2 153 59.5
Sopen10g004370 Solanum pennellii HOM05D002321 ORTHO05D006445 4.2e-39 165.2 149 61.7
TAR381G0422 Trochodendron aralioides HOM05D002321 ORTHO05D006445 7.2e-39 164.5 149 62.4
TAR381G1352 Trochodendron aralioides HOM05D002321 ORTHO05D006445 7.2e-39 164.5 149 62.4
Sed0020041 Sechium edule HOM05D002321 ORTHO05D006445 8.0e-38 161.0 153 60.8
Solyc10g008560.3 Solanum lycopersicum HOM05D002321 ORTHO05D006445 8.0e-38 161.0 155 60.6
Cpa.g.sc173.6 Carica papaya HOM05D002321 ORTHO05D006445 1.8e-37 159.8 155 56.8
unitig_26.g9009 Utricularia gibba HOM05D002321 ORTHO05D006445 1.8e-37 159.8 142 58.5
Cc02_g23720 Coffea canephora HOM05D002321 ORTHO05D006445 3.0e-37 159.1 153 58.8
Ciclev10000869m.g Citrus clementina HOM05D002321 ORTHO05D006445 4.0e-37 158.7 156 56.4
Manes.07G030900 Manihot esculenta HOM05D002321 ORTHO05D006445 5.2e-37 158.3 167 56.3
Sc03g0005760 Simmondsia chinensis HOM05D002321 ORTHO05D006445 8.9e-37 157.5 142 58.5
CSS0017136 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D006445 1.2e-36 157.1 149 61.1
PGSC0003DMG400021663 Solanum tuberosum HOM05D002321 ORTHO05D006445 1.2e-36 157.1 138 64.5
PGR042G0050 Punica granatum HOM05D002321 ORTHO05D006445 1.5e-36 156.8 151 59.6
vmacro19825 Vaccinium macrocarpon HOM05D002321 ORTHO05D006445 1.5e-36 156.8 141 61.0
Ah.02g128460 Amaranthus hybridus HOM05D002321 ORTHO05D006445 2.0e-36 156.4 150 60.0
Manes.10G106100 Manihot esculenta HOM05D002321 ORTHO05D006445 2.0e-36 156.4 168 56.0
Nn5g27149 Nelumbo nucifera HOM05D002321 ORTHO05D006445 2.0e-36 156.4 164 54.9
Rhsim05G0115000 Rhododendron simsii HOM05D002321 ORTHO05D006445 2.6e-36 156.0 154 59.7
Gohir.A03G081200 Gossypium hirsutum HOM05D002321 ORTHO05D006445 5.7e-36 154.8 144 59.7
Gohir.D02G105400 Gossypium hirsutum HOM05D002321 ORTHO05D006445 7.5e-36 154.5 144 59.0
HanXRQChr09g0248771 Helianthus annuus HOM05D002321 ORTHO05D006445 9.8e-36 154.1 168 56.5
Sabra01G0174700 Salix brachista HOM05D002321 ORTHO05D006445 9.8e-36 154.1 152 58.6
Gorai.005G119600 Gossypium raimondii HOM05D002321 ORTHO05D006445 1.3e-35 153.7 144 58.3
CAN.G168.25 Capsicum annuum HOM05D002321 ORTHO05D006445 1.7e-35 153.3 158 55.7
Thecc.06G020000 Theobroma cacao HOM05D002321 ORTHO05D006445 3.7e-35 152.1 147 55.1
GSVIVG01023138001 Vitis vinifera HOM05D002321 ORTHO05D006445 3.7e-35 152.1 148 58.8
ClCG05G014590 Citrullus lanatus HOM05D002321 ORTHO05D006445 4.9e-35 151.8 152 56.6
ClCG10G007500 Citrullus lanatus HOM05D002321 ORTHO05D006445 4.9e-35 151.8 152 56.6
Atru.chr6.213 Acer truncatum HOM05D002321 ORTHO05D006445 6.3e-35 151.4 172 52.3
CDE07G1618 Ceratophyllum demersum HOM05D002321 ORTHO05D006445 6.3e-35 151.4 140 57.9
Lsat_1_v5_gn_9_124960 Lactuca sativa HOM05D002321 ORTHO05D006445 8.3e-35 151.0 154 51.9
Ah.03g136750 Amaranthus hybridus HOM05D002321 ORTHO05D006445 1.4e-34 150.2 134 59.0
CANSAT01G1907 Cannabis sativa HOM05D002321 ORTHO05D006445 1.4e-34 150.2 144 56.9
AUR62040128 Chenopodium quinoa HOM05D002321 ORTHO05D006445 1.8e-34 149.8 147 56.5
TWI59G0552 Tripterygium wilfordii HOM05D002321 ORTHO05D006445 1.8e-34 149.8 149 55.0
MBI03_g34265_MAGBIO Magnolia biondii HOM05D002321 ORTHO05D006445 2.4e-34 149.4 144 55.6
EL10Ac6g13971 Beta vulgaris HOM05D002321 ORTHO05D006445 3.1e-34 149.1 136 58.8
QL02p103548 Quercus lobata HOM05D002321 ORTHO05D006445 4.1e-34 148.7 160 53.1
CsaV3_3G006710 Cucumis sativus L. HOM05D002321 ORTHO05D006445 1.6e-33 146.7 145 53.8
MELO3C016450.2 Cucumis melo HOM05D002321 ORTHO05D006445 2.7e-33 146.0 148 52.7
ECA238G2920 Erigeron canadensis HOM05D002321 ORTHO05D006445 5.9e-33 144.8 162 51.2
PSO447G0115 Papaver somniferum HOM05D002321 ORTHO05D006445 7.8e-33 144.4 142 54.9
QL02p065019 Quercus lobata HOM05D002321 ORTHO05D006445 1.3e-32 143.7 145 55.9
Duzib192G0835 Durio zibethinus HOM05D002321 ORTHO05D006445 2.9e-32 142.5 157 49.7
Eucgr.G00067 Eucalyptus grandis HOM05D002321 ORTHO05D006445 3.9e-32 142.1 147 53.7
AUR62042961 Chenopodium quinoa HOM05D002321 ORTHO05D006445 5.0e-32 141.7 149 53.7
PSO210G3878 Papaver somniferum HOM05D002321 ORTHO05D006445 5.0e-32 141.7 141 54.6
Peaxi162Scf00000g00067 Petunia axillaris HOM05D002321 ORTHO05D006445 1.9e-31 139.8 150 56.0
TAR628G0417 Trochodendron aralioides HOM05D002321 ORTHO05D006445 1.9e-31 139.8 130 56.2
unitig_749.g14114 Utricularia gibba HOM05D002321 ORTHO05D006445 3.3e-31 139.0 152 53.9
Duzib160G0234 Durio zibethinus HOM05D002321 ORTHO05D006445 9.5e-31 137.5 148 50.7
RcHm_v2.0_Chr7g0219391 Rosa chinensis HOM05D002321 ORTHO05D006445 1.2e-30 137.1 142 54.2
Cfa004434 Carpinus fangiana HOM05D002321 ORTHO05D006445 2.8e-30 136.0 152 53.3
Haze_09974 Corylus avellana HOM05D002321 ORTHO05D006445 2.8e-30 136.0 150 51.3
Prupe.1G585900 Prunus persica HOM05D002321 ORTHO05D006445 2.8e-30 136.0 134 53.7
Sed0026062 Sechium edule HOM05D002321 ORTHO05D006445 8.0e-30 134.4 148 50.7
SHI04994 Sapria himalayana HOM05D002321 ORTHO05D006445 2.3e-29 132.9 196 45.4
Medtr4g077650 Medicago truncatula HOM05D002321 ORTHO05D006445 5.2e-29 131.7 135 52.6
Potri.004G229500 Populus trichocarpa HOM05D002321 ORTHO05D006445 1.2e-28 130.6 95 67.4
arahy.Tifrunner.gnm1.ann1.AGW9EK Arachis hypogaea HOM05D002321 ORTHO05D006445 1.5e-28 130.2 144 50.7
Psat4g002680 Pisum sativum HOM05D002321 ORTHO05D006445 1.5e-28 130.2 146 52.7
Aa31sc221G80 Aethionema arabicum HOM05D002321 ORTHO05D006445 2.0e-28 129.8 164 48.8
THA.LOC104809044 Tarenaya hassleriana HOM05D002321 ORTHO05D006445 2.6e-28 129.4 136 52.2
VMungo1215G1402 Vigna mungo HOM05D002321 ORTHO05D006445 3.4e-28 129.0 151 49.7
MD15G1443300 Malus domestica HOM05D002321 ORTHO05D006445 5.8e-28 128.3 141 51.1
ATR1089G008 Amborella trichopoda HOM05D002321 ORTHO05D006445 1.3e-27 127.1 144 48.6
FAN04G1883 Fragaria x ananassa HOM05D002321 ORTHO05D006445 1.3e-27 127.1 139 52.5
THA.LOC104824539 Tarenaya hassleriana HOM05D002321 ORTHO05D006445 1.3e-27 127.1 129 53.5
BcaB05g24065 Brassica carinata HOM05D002321 ORTHO05D006445 1.7e-27 126.7 147 49.0
TPR.G5983 Trifolium pratense HOM05D002321 ORTHO05D006445 1.7e-27 126.7 142 50.0
FAN18G0084 Fragaria x ananassa HOM05D002321 ORTHO05D006445 2.9e-27 125.9 139 52.5
FvH4_5g27690 Fragaria vesca HOM05D002321 ORTHO05D006445 3.7e-27 125.6 139 52.5
Aqoxy6G00020 Aquilegia oxysepala HOM05D002321 ORTHO05D006445 6.4e-27 124.8 147 49.0
MD08G1248500 Malus domestica HOM05D002321 ORTHO05D006445 6.4e-27 124.8 141 51.1
FAN08G1447 Fragaria x ananassa HOM05D002321 ORTHO05D006445 8.3e-27 124.4 139 51.8
FAN13G2899 Fragaria x ananassa HOM05D002321 ORTHO05D006445 8.3e-27 124.4 139 51.8
Sp6g11270 Schrenkiella parvula HOM05D002321 ORTHO05D006445 8.3e-27 124.4 148 50.0
AT5G49820 Arabidopsis thaliana HOM05D002321 ORTHO05D006445 2.4e-26 122.9 140 50.7
Lj4g0019033 Lotus japonicus HOM05D002321 ORTHO05D006445 2.4e-26 122.9 144 47.2
Carub.0008s0970 Capsella rubella HOM05D002321 ORTHO05D006445 3.2e-26 122.5 149 48.3
Phvul.003G091200 Phaseolus vulgaris HOM05D002321 ORTHO05D006445 5.4e-26 121.7 128 53.9
BcaC03g14664 Brassica carinata HOM05D002321 ORTHO05D006445 2.0e-25 119.8 147 51.0
C02p20990 Brassica napus HOM05D002321 ORTHO05D006445 2.0e-25 119.8 147 51.0
BolC2t08242H Brassica oleracea HOM05D002321 ORTHO05D006445 2.0e-25 119.8 147 51.0
Medtr4g134590 Medicago truncatula HOM05D002321 ORTHO05D006445 2.7e-25 119.4 127 50.4
BraA02t06346Z Brassica rapa HOM05D002321 ORTHO05D006445 3.5e-25 119.0 147 50.3
Thhalv10013323m.g Eutrema salsugineum HOM05D002321 ORTHO05D006445 4.6e-25 118.6 150 48.7
A02p12920 Brassica napus HOM05D002321 ORTHO05D006445 6.0e-25 118.2 147 50.3
AL8G23790 Arabidopsis lyrata HOM05D002321 ORTHO05D006445 3.0e-24 115.9 148 48.0
HPP92_019419 Vanilla planifolia HOM05D002321 ORTHO05D006445 1.1e-23 114.0 141 45.4
Zm00001eb145400 Zea mays HOM05D002321 ORTHO05D006445 3.3e-23 112.5 147 44.2
Glyma.07G272200 Glycine max HOM05D002321 ORTHO05D006445 5.2e-21 105.1 146 43.8
Os01g0886900 Oryza sativa ssp. japonica HOM05D002321 ORTHO05D006445 6.8e-21 104.8 153 41.8
Ca_13527_v3 Cicer arietinum L. HOM05D002321 ORTHO05D006445 8.9e-21 104.4 119 52.1
Zm00001eb288290 Zea mays HOM05D002321 ORTHO05D006445 4.4e-20 102.1 84 59.5
Glyma.17G002100 Glycine max HOM05D002321 ORTHO05D006445 7.5e-20 101.3 151 44.4
Zm00001eb349160 Zea mays HOM05D002321 ORTHO05D006445 1.7e-19 100.1 84 56.0
BcaB01g02869 Brassica carinata HOM05D002321 ORTHO05D006445 4.9e-19 98.6 84 57.1
Lalb_Chr12g0195871 Lupinus albus HOM05D002321 ORTHO05D006445 2.4e-18 96.3 156 39.1
Lj2A190G47 Lonicera japonica HOM05D000756 ORTHO05D000604 1.6e-14 83.6 91 51.6
Pp3c6_25980 Physcomitrium patens HOM05D002321 ORTHO05D006445 8.9e-13 77.8 79 43.0
SEGI_38877 Sequoiadendron giganteum HOM05D002321 ORTHO05D006445 2.6e-12 76.3 129 34.1
ClCG10G007490 Citrullus lanatus HOM05D002321 ORTHO05D006445 3.4e-12 75.9 109 46.8
Pp3c5_3000 Physcomitrium patens HOM05D002321 ORTHO05D006445 5.8e-12 75.1 79 40.5
MBI06_g43030_MAGBIO Magnolia biondii HOM05D002321 ORTHO05D006445 1.6e-09 67.0 38 76.3
Zm00001eb365980 Zea mays HOM05D002321 ORTHO05D006445 1.6e-09 67.0 36 83.3
Mapoly0083s0024 Marchantia polymorpha HOM05D002321 ORTHO05D006445 2.1e-09 66.6 85 42.4
arahy.Tifrunner.gnm1.ann1.M3HJLJ Arachis hypogaea HOM05D002321 ORTHO05D006445 7.8e-09 64.7 34 82.4
COL.COLO4_31117 Corchorus olitorius HOM05D002321 ORTHO05D006445 7.8e-09 64.7 36 77.8
CARHR258950 Cardamine hirsuta HOM05D002321 ORTHO05D006445 1.3e-08 63.9 126 36.5
SMO351G0153 Selaginella moellendorffii HOM05D002321 ORTHO05D006445 1.3e-08 63.9 105 37.1
CiPaw.05G001300 Carya illinoinensis HOM05D002321 ORTHO05D006445 1.7e-08 63.5 34 79.4
Dinv20865 Davidia involucrata HOM05D002321 ORTHO05D006445 2.3e-08 63.2 34 82.4


User provided reference genes

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