Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 3.4e-61 238.0 112 100.0
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 5.7e-32 141.0 106 66.0
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 6.3e-31 137.5 102 66.7
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 8.2e-31 137.1 106 64.2
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 6.9e-30 134.0 101 67.3
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 8.5e-28 127.1 100 63.0
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 3.2e-27 125.2 106 57.5
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 7.2e-27 124.0 102 60.8
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 2.1e-26 122.5 106 57.5
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 2.7e-26 122.1 100 59.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 2.3e-25 119.0 97 61.9
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.0e-25 118.6 106 55.7
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 3.0e-25 118.6 106 56.6
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 3.0e-25 118.6 100 57.0
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 1.5e-24 116.3 100 58.0
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.5e-24 116.3 104 56.7
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.0e-24 115.9 102 58.8
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 2.0e-24 115.9 97 60.8
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 3.3e-24 115.2 102 58.8
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.3e-24 115.2 102 54.9
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 4.4e-24 114.8 100 57.0
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 4.4e-24 114.8 102 57.8
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 7.4e-24 114.0 104 54.8
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 7.4e-24 114.0 106 55.7
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 7.4e-24 114.0 101 56.4
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 9.7e-24 113.6 97 58.8
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.3e-23 113.2 102 56.9
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.7e-23 112.8 100 58.0
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.7e-23 112.8 97 56.7
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.7e-23 112.8 97 56.7
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 2.2e-23 112.5 106 55.7
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 2.2e-23 112.5 102 57.8
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.2e-23 112.5 102 52.9
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 3.7e-23 111.7 100 56.0
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 6.3e-23 110.9 104 51.9
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 6.3e-23 110.9 104 54.8
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 8.2e-23 110.5 102 55.9
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 8.2e-23 110.5 100 57.0
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.1e-22 110.2 104 54.8
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 1.1e-22 110.2 102 53.9
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.4e-22 109.8 106 54.7
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.4e-22 109.8 97 56.7
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.4e-22 109.8 101 55.4
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 2.4e-22 109.0 100 56.0
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.1e-22 108.2 97 54.6
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 5.3e-22 107.8 100 52.0
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 5.3e-22 107.8 100 52.0
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 5.3e-22 107.8 102 52.9
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 5.3e-22 107.8 104 51.9
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 7.0e-22 107.5 102 55.9
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 9.1e-22 107.1 100 54.0
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 9.1e-22 107.1 100 55.0
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 9.1e-22 107.1 97 56.7
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 9.1e-22 107.1 106 53.8
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 9.1e-22 107.1 97 55.7
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 9.1e-22 107.1 102 52.9
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.2e-21 106.7 105 54.3
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.2e-21 106.7 101 51.5
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 1.6e-21 106.3 100 56.0
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 1.6e-21 106.3 102 55.9
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 1.6e-21 106.3 101 51.5
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 1.6e-21 106.3 104 50.0
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.0e-21 105.9 97 56.7
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 2.6e-21 105.5 102 54.9
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.6e-21 105.5 97 55.7
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.6e-21 105.5 97 55.7
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.5e-21 105.1 100 54.0
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 3.5e-21 105.1 100 54.0
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 3.5e-21 105.1 100 55.0
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 4.5e-21 104.8 100 55.0
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 4.5e-21 104.8 100 55.0
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 4.5e-21 104.8 102 54.9
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 4.5e-21 104.8 98 57.1
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 4.5e-21 104.8 102 52.9
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 5.9e-21 104.4 102 52.9
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 7.7e-21 104.0 103 53.4
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 7.7e-21 104.0 100 56.0
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.0e-20 103.6 97 54.6
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.3e-20 103.2 102 49.0
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.3e-20 103.2 103 52.4
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.7e-20 102.8 100 54.0
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.7e-20 102.8 97 52.6
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.7e-20 102.8 100 57.0
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 2.9e-20 102.1 102 52.9
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.9e-20 102.1 97 51.5
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.8e-20 101.7 104 51.0
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 5.0e-20 101.3 97 54.6
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 6.5e-20 100.9 97 52.6
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 6.5e-20 100.9 96 54.2
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 6.5e-20 100.9 101 51.5
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 8.5e-20 100.5 102 51.0
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.1e-19 100.1 100 52.0
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.5e-19 99.8 97 53.6
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.5e-19 99.8 102 52.9
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.9e-19 99.4 96 53.1
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 1.9e-19 99.4 96 53.1
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.9e-19 99.4 103 52.4
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 3.2e-19 98.6 97 51.5
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 3.2e-19 98.6 96 52.1
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 3.2e-19 98.6 106 47.2
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.2e-19 98.6 102 52.0
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.2e-19 98.6 102 49.0
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 3.2e-19 98.6 97 53.6
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 4.2e-19 98.2 97 52.6
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 4.2e-19 98.2 97 51.5
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 9.4e-19 97.1 100 50.0
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 4.7e-18 94.7 102 48.0
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 6.1e-18 94.4 97 48.5
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 6.1e-18 94.4 106 49.1
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.0e-17 93.6 106 49.1
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 2.3e-17 92.4 97 48.5
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 8.8e-17 90.5 106 48.1
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 1.2e-16 90.1 106 39.6
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 2.6e-16 89.0 103 46.6
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 4.4e-16 88.2 104 42.3
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 4.8e-15 84.7 79 55.7
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 6.3e-15 84.3 101 42.6
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.2e-13 80.1 101 45.5
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.6e-13 79.7 76 50.0
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 7.7e-13 77.4 98 45.9
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 2.2e-12 75.9 102 42.2
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 2.5e-11 72.4 113 38.9
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.0e-09 67.0 55 58.2
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.0e-08 62.8 83 44.6
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.4e-08 62.0 73 46.6
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.3e-07 60.1 89 42.7
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 4.8e-07 58.2 80 42.5
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 1.4e-06 56.6 77 41.6
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 5.4e-06 54.7 44 59.1


User provided reference genes

Program Settings