Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.8e-102 375.9 188 100.0
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.9e-81 305.4 187 79.1
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 8.8e-78 293.9 187 75.4
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.6e-77 292.4 187 73.8
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.5e-77 290.8 188 73.4
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.7e-76 289.7 187 74.3
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 2.2e-76 289.3 189 73.5
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.8e-76 288.9 175 79.4
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.8e-76 288.9 187 74.3
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.8e-76 288.9 187 74.3
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.8e-76 288.9 173 78.0
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 3.7e-76 288.5 187 72.7
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 6.3e-76 287.7 186 72.6
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 8.2e-76 287.3 186 73.7
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 8.2e-76 287.3 187 73.3
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 8.2e-76 287.3 188 72.3
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.1e-75 287.0 186 73.7
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.8e-75 286.2 186 73.1
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 3.1e-75 285.4 188 72.3
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 3.1e-75 285.4 186 73.1
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 3.1e-75 285.4 186 73.1
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.3e-75 284.6 187 73.3
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 7.0e-75 284.3 188 71.8
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 9.1e-75 283.9 173 78.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 9.1e-75 283.9 187 72.2
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 9.1e-75 283.9 187 72.7
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.2e-74 283.5 187 74.9
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.2e-74 283.5 188 72.9
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.6e-74 283.1 188 71.3
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.6e-74 283.1 183 74.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.6e-74 283.1 184 71.7
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.0e-74 282.7 188 71.3
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 3.5e-74 282.0 188 71.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.5e-74 282.0 188 72.9
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.5e-74 282.0 187 72.2
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.5e-74 281.6 173 78.0
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.7e-74 280.8 182 75.3
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.0e-73 280.4 188 71.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.0e-73 280.4 187 71.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.3e-73 280.0 172 79.1
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-73 280.0 185 73.0
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.7e-73 279.6 187 71.7
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.7e-73 279.6 188 71.8
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.7e-73 279.6 175 75.4
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.2e-73 279.3 187 71.1
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 3.8e-73 278.5 188 70.7
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.8e-73 278.5 187 71.7
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 3.8e-73 278.5 175 74.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.8e-73 278.5 183 71.0
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 5.0e-73 278.1 173 74.6
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 6.5e-73 277.7 187 71.1
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 6.5e-73 277.7 174 73.6
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 8.5e-73 277.3 188 70.7
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.5e-73 277.3 194 69.6
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 8.5e-73 277.3 187 70.1
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.1e-72 276.9 188 69.7
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.5e-72 275.8 175 73.7
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 3.2e-72 275.4 188 69.7
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.2e-72 275.0 187 69.5
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 5.5e-72 274.6 173 76.3
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 7.2e-72 274.2 173 72.3
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.7e-71 272.3 173 75.7
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.7e-71 272.3 173 75.7
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.7e-71 272.3 173 75.7
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 3.6e-71 271.9 174 75.3
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 6.1e-71 271.2 175 74.3
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 6.1e-71 271.2 175 72.6
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.4e-70 270.0 173 75.1
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.8e-70 269.6 187 72.2
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.8e-70 269.6 173 74.0
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 5.2e-70 268.1 184 71.7
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.5e-69 266.5 186 68.3
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.6e-69 265.8 163 76.1
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 7.5e-69 264.2 183 71.6
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 9.8e-69 263.8 182 69.2
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.7e-68 263.1 158 80.4
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.7e-68 263.1 173 72.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.7e-68 263.1 188 68.6
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 2.2e-68 262.7 182 69.2
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.8e-68 262.3 182 68.7
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 3.7e-68 261.9 186 68.8
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.8e-68 261.5 162 77.2
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-67 260.0 186 67.7
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 2.4e-67 259.2 170 72.4
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.4e-67 259.2 182 68.7
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 5.4e-67 258.1 155 79.4
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.4e-67 258.1 171 70.2
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 2.0e-66 256.1 173 70.5
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 5.9e-66 254.6 172 72.1
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 7.7e-66 254.2 176 67.6
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 3.8e-65 251.9 164 72.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 3.8e-65 251.9 171 68.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.1e-64 250.4 182 65.4
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.1e-64 250.4 163 70.6
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 9.5e-64 247.3 163 69.9
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 9.5e-64 247.3 164 70.1
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.6e-63 246.5 182 65.9
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.6e-63 246.5 168 68.5
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 8.0e-63 244.2 170 67.6
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 8.0e-63 244.2 183 65.0
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.0e-62 243.8 164 70.7
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.4e-62 243.4 163 70.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.8e-62 243.0 162 71.0
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.8e-62 243.0 162 71.0
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.8e-62 243.0 170 67.1
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.3e-62 242.7 189 63.0
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 5.2e-62 241.5 170 65.9
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 8.8e-62 240.7 170 68.2
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 7.5e-61 237.7 170 67.6
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 9.8e-61 237.3 176 64.8
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.7e-60 236.5 173 64.7
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.2e-60 236.1 171 65.5
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.2e-60 236.1 167 68.3
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.8e-60 235.7 158 75.9
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.9e-60 235.0 164 67.1
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 8.3e-60 234.2 167 68.3
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 8.3e-60 234.2 172 64.5
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.4e-59 233.4 164 67.1
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.4e-59 233.4 172 64.0
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.1e-59 232.3 163 67.5
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 5.4e-59 231.5 171 64.3
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 9.2e-59 230.7 134 80.6
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.6e-58 229.9 185 62.7
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.7e-58 229.2 169 64.5
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.3e-57 226.1 169 63.3
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 3.8e-57 225.3 170 60.0
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.6e-57 224.2 150 71.3
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 8.6e-57 224.2 168 63.1
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.5e-56 223.4 175 64.6
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.9e-56 223.0 165 63.0
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 5.6e-56 221.5 172 61.0
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 6.1e-55 218.0 170 61.2
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.8e-54 216.5 160 61.2
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.8e-54 216.5 165 65.5
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-54 216.5 165 65.5
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.3e-54 216.1 168 63.7
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 3.0e-54 215.7 134 71.6
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.2e-54 214.9 168 63.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.8e-54 214.5 180 56.1
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.2e-53 213.8 159 59.7
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 2.6e-53 212.6 170 60.6
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.8e-53 210.7 182 60.4
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 3.7e-52 208.8 160 61.2
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.4e-51 206.8 163 60.1
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.7e-50 202.6 158 60.8
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 2.7e-50 202.6 160 61.9
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.5e-50 202.2 187 59.9
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 7.8e-50 201.1 166 63.3
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.0e-49 200.7 156 60.3
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.6e-49 198.0 138 72.5
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.4e-46 190.3 176 56.2
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.3e-46 189.5 154 55.2
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.2e-45 187.2 132 68.9
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.3e-44 183.7 159 54.1
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.7e-44 183.3 129 68.2
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.7e-44 183.3 164 55.5
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.6e-42 176.8 162 58.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.0e-41 172.6 129 62.8
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 5.0e-41 171.8 169 51.5
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.9e-40 169.9 176 51.7
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.3e-40 169.1 176 51.7
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.6e-40 168.3 129 63.6
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.7e-36 155.6 116 68.1
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.5e-32 143.7 90 73.3
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.5e-32 142.9 94 70.2
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.3e-32 142.1 97 70.1
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.8e-30 136.7 93 67.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.8e-30 136.7 150 44.0
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.9e-28 129.4 91 62.6
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.3e-25 119.8 175 40.6
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.4e-22 110.5 72 68.1
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.6e-17 91.7 68 70.6
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.6e-17 91.7 79 57.0
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 4.5e-13 79.0 173 31.2
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-12 77.4 52 69.2
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 4.2e-11 72.4 122 38.5
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 2.3e-09 66.6 180 26.7
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 3.9e-09 65.9 86 43.0
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.5e-08 63.9 180 30.6
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.9e-08 63.5 36 72.2
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 2.5e-08 63.2 36 72.2
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-07 59.3 39 66.7
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 5.3e-06 55.5 32 75.0


User provided reference genes

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