Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.4e-245 852.4 421 100.0
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.3e-209 733.0 415 83.6
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 8.2e-209 730.3 415 83.6
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 9.1e-208 726.9 416 84.6
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.0e-206 723.4 419 82.6
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.7e-198 696.0 415 78.3
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 6.8e-195 684.1 415 77.1
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.5e-194 682.9 420 76.2
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.7e-194 681.0 418 77.5
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 9.8e-194 680.2 415 77.6
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.7e-193 679.5 458 72.5
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 2.2e-193 679.1 415 77.6
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 2.8e-193 678.7 415 78.1
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 3.7e-193 678.3 415 76.6
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 6.3e-193 677.6 415 77.3
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 8.3e-193 677.2 415 77.1
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 5.4e-192 674.5 415 77.8
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 7.0e-192 674.1 417 76.5
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.2e-191 673.3 415 76.1
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.3e-190 669.1 415 75.4
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.3e-190 669.1 432 74.3
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.8e-190 668.3 429 75.1
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 6.6e-190 667.5 416 76.2
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.5e-189 665.6 414 75.6
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 2.5e-189 665.6 414 76.3
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 4.3e-189 664.8 418 75.4
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 5.6e-189 664.5 437 72.8
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 9.5e-189 663.7 414 75.6
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.2e-188 663.3 414 76.1
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 6.1e-188 661.0 414 74.9
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.4e-187 659.8 415 74.9
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 3.0e-187 658.7 504 65.3
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.0e-186 656.0 414 74.4
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.0e-186 656.0 414 74.9
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 9.8e-186 653.7 419 72.3
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.3e-185 653.3 415 72.8
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.3e-185 653.3 431 72.4
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.7e-185 652.9 410 73.7
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.7e-185 652.9 415 74.2
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.9e-185 652.1 415 72.5
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 3.7e-185 651.7 419 72.1
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.7e-185 651.7 415 74.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 3.7e-185 651.7 413 73.4
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.9e-185 651.4 415 74.5
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 8.3e-185 650.6 414 73.7
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 8.3e-185 650.6 418 74.2
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.1e-184 650.2 414 73.4
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.2e-184 648.7 418 73.0
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.1e-184 648.3 410 73.9
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 5.4e-184 647.9 415 73.3
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 7.0e-184 647.5 415 73.3
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.0e-183 646.0 415 74.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.6e-183 644.8 415 73.7
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 5.9e-183 644.4 415 74.7
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 7.8e-183 644.0 416 72.1
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.3e-182 643.3 410 73.2
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 8.6e-182 640.6 417 73.4
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 8.6e-182 640.6 414 72.0
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.1e-181 640.2 418 72.5
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.5e-181 639.8 415 74.0
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.5e-181 639.8 414 72.9
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.5e-181 639.8 414 72.0
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.9e-181 639.4 414 71.5
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.5e-181 639.0 419 70.6
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 2.5e-181 639.0 410 72.0
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.5e-181 639.0 415 72.8
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.3e-181 638.6 415 72.0
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 3.3e-181 638.6 415 73.7
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 3.3e-181 638.6 415 73.7
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 4.3e-181 638.3 414 72.2
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 4.3e-181 638.3 410 72.0
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 5.6e-181 637.9 415 72.3
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 7.3e-181 637.5 414 72.0
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 7.3e-181 637.5 415 73.0
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 7.3e-181 637.5 415 73.0
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 9.5e-181 637.1 415 72.8
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 9.5e-181 637.1 417 72.7
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.2e-180 636.7 415 71.3
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.2e-180 636.7 412 72.6
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 2.1e-180 636.0 414 71.7
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 3.6e-180 635.2 415 70.8
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.6e-180 635.2 414 70.8
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 4.7e-180 634.8 415 70.8
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 4.7e-180 634.8 415 71.3
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.2e-180 634.4 415 73.3
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 8.0e-180 634.0 415 72.0
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.1e-179 633.6 415 71.3
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.1e-179 633.6 409 72.4
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.4e-179 633.3 415 71.3
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.3e-179 632.5 410 72.0
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.3e-179 632.5 409 71.6
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 3.1e-179 632.1 409 71.6
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.0e-179 631.7 431 71.2
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 5.2e-179 631.3 434 70.3
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 8.9e-179 630.6 415 71.3
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 5.8e-178 627.9 409 69.9
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 9.8e-178 627.1 414 69.8
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.7e-177 626.3 431 70.8
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 4.9e-177 624.8 416 70.4
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 6.4e-177 624.4 416 70.4
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 6.4e-177 624.4 417 70.3
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.4e-177 624.4 431 70.8
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 8.3e-177 624.0 410 70.0
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.1e-176 623.6 402 74.1
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.4e-176 622.5 452 65.5
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.2e-176 622.1 414 71.3
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 5.4e-176 621.3 415 69.2
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.6e-175 619.8 414 69.3
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 4.6e-175 618.2 417 70.3
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 6.0e-175 617.8 415 70.6
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 6.0e-175 617.8 415 73.5
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.0e-174 617.1 415 72.5
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.9e-174 615.1 415 70.8
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 5.0e-174 614.8 414 68.4
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 6.6e-174 614.4 415 70.6
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 2.5e-173 612.5 415 67.7
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.3e-173 610.9 418 71.3
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 4.7e-172 608.2 416 69.7
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 6.2e-172 607.8 415 68.2
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 3.4e-170 602.1 412 68.7
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 7.5e-170 600.9 416 66.8
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 1.7e-169 599.7 367 76.8
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.4e-168 596.7 418 68.4
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.4e-168 594.7 360 78.6
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 4.6e-167 591.7 417 68.3
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.0e-166 590.5 412 68.0
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.1e-165 587.0 415 66.5
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.3e-165 585.1 412 66.3
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 5.2e-163 578.2 415 65.8
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.4e-160 569.3 419 64.0
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 3.3e-157 558.9 363 72.5
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.2e-156 557.0 357 72.5
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.1e-155 553.9 340 75.9
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.7e-153 546.6 410 63.4
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 2.2e-153 546.2 415 64.1
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.1e-148 529.6 340 72.4
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.8e-147 526.6 410 59.8
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 7.6e-146 521.2 432 61.6
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.3e-145 520.4 411 60.1
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.1e-141 507.3 410 58.3
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 3.8e-137 492.3 414 58.0
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 6.2e-132 474.9 428 54.7
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.7e-127 459.5 302 71.9
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.3e-125 452.6 340 64.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.5e-113 411.8 314 64.6
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 3.2e-112 409.5 291 69.8
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 3.7e-108 396.0 302 64.9
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.7e-105 387.1 405 46.4
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 4.2e-104 382.5 407 48.2
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.4e-102 377.5 223 78.5
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 4.4e-101 372.5 507 40.4
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.2e-100 370.2 424 46.0
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.6e-95 354.0 235 71.5
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.1e-88 331.3 198 78.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 7.2e-88 328.6 198 78.3
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 3.0e-86 323.2 243 62.1
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 3.0e-78 296.6 220 66.8
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 8.9e-70 268.5 231 60.2
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.4e-67 260.4 173 71.1
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.2e-63 245.7 163 69.3
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 5.2e-62 242.7 258 53.1
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.1e-56 224.9 230 53.5
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.2e-55 221.5 153 68.0
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.6e-55 221.1 180 61.7
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.1e-54 216.9 167 64.1
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.6e-49 199.1 124 72.6
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.2e-46 189.5 121 71.1
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.8e-46 189.1 175 54.3
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 3.8e-44 183.3 122 70.5
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 2.3e-41 174.1 123 65.0
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.9e-41 173.3 333 35.1
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.0e-37 161.0 339 33.9
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 3.4e-37 160.2 100 71.0
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.3e-33 148.3 122 55.7
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 4.2e-27 126.7 85 70.6
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.9e-24 117.9 66 77.3
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.1e-23 114.4 71 74.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.8e-22 111.3 124 48.4
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 4.6e-18 96.7 59 69.5
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 4.8e-15 86.7 89 48.3
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.1e-14 85.5 89 46.1
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.2e-11 73.6 60 56.7
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 3.7e-07 60.5 78 33.3
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.4e-06 58.5 35 68.6


User provided reference genes

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