Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 8.1e-143 510.4 254 100.0
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 2.9e-132 475.3 250 92.4
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 1.3e-129 466.5 254 89.8
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 4.9e-124 448.0 254 85.8
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 4.9e-124 448.0 254 85.8
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 1.4e-123 446.4 254 85.8
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 4.6e-122 441.4 254 84.6
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 6.0e-122 441.0 251 84.1
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 6.0e-122 441.0 251 84.1
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.9e-122 440.7 254 82.7
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 7.9e-122 440.7 254 83.9
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.8e-121 439.5 254 82.3
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 2.3e-121 439.1 254 81.9
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 3.0e-121 438.7 252 84.1
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 5.1e-121 438.0 254 81.9
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 8.7e-121 437.2 264 82.2
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.1e-120 436.8 251 84.1
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 1.1e-120 436.8 254 84.3
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 1.5e-120 436.4 254 82.7
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.3e-120 435.3 254 83.1
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 5.6e-120 434.5 254 84.6
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 9.6e-120 433.7 255 82.7
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 2.8e-119 432.2 255 83.1
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 3.7e-119 431.8 254 83.1
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 6.2e-119 431.0 254 83.1
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 8.1e-119 430.6 254 81.9
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 1.1e-118 430.3 251 82.9
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.1e-118 430.3 254 83.1
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.4e-118 429.9 254 81.1
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.4e-118 429.9 252 82.9
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 2.4e-118 429.1 255 81.6
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 2.4e-118 429.1 255 81.6
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 4.0e-118 428.3 254 81.5
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 5.3e-118 427.9 254 81.5
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 6.9e-118 427.6 251 82.9
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 2.0e-117 426.0 254 80.7
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 2.6e-117 425.6 282 75.9
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 5.8e-117 424.5 258 82.2
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.6e-117 424.1 281 75.4
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 7.6e-117 424.1 254 79.9
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 1.7e-116 422.9 254 79.9
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 2.2e-116 422.5 254 79.9
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 2.9e-116 422.2 254 80.3
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 3.8e-116 421.8 254 80.3
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 3.8e-116 421.8 250 80.8
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 4.9e-116 421.4 254 80.3
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 4.9e-116 421.4 254 80.3
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 4.9e-116 421.4 251 80.5
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 6.5e-116 421.0 254 80.3
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 6.5e-116 421.0 254 81.1
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 6.5e-116 421.0 254 81.5
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 6.5e-116 421.0 250 79.6
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 8.4e-116 420.6 254 81.1
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 8.4e-116 420.6 254 79.9
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 8.4e-116 420.6 250 80.8
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 1.1e-115 420.2 255 81.2
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 1.1e-115 420.2 257 80.9
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 1.1e-115 420.2 258 80.6
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 1.1e-115 420.2 256 80.1
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 1.4e-115 419.9 254 79.5
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 1.4e-115 419.9 257 81.3
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 1.9e-115 419.5 258 81.0
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 2.5e-115 419.1 254 80.7
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 3.2e-115 418.7 253 80.2
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 3.2e-115 418.7 250 79.6
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.2e-115 418.3 275 76.4
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 4.2e-115 418.3 254 79.9
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 5.5e-115 417.9 251 80.5
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 7.1e-115 417.5 254 79.5
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 9.3e-115 417.2 256 79.7
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 1.6e-114 416.4 256 80.1
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 3.5e-114 415.2 250 79.2
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 1.8e-113 412.9 239 82.8
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 2.3e-113 412.5 259 78.8
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 3.0e-113 412.1 256 80.1
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 5.1e-113 411.4 254 79.1
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 4.3e-112 408.3 256 78.9
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 1.6e-111 406.4 251 76.9
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.6e-111 406.4 294 70.4
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 2.8e-111 405.6 249 77.1
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 1.4e-110 403.3 225 84.0
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 1.2e-109 400.2 251 76.5
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.5e-109 399.8 226 84.1
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 2.2e-108 396.0 251 76.5
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.4e-107 393.3 255 78.0
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 6.7e-105 384.4 232 79.7
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 6.7e-105 384.4 232 79.7
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 1.2e-101 373.6 222 79.7
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 5.9e-101 371.3 255 72.5
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 7.7e-101 370.9 254 74.0
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 8.5e-100 367.5 249 73.9
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 5.5e-99 364.8 250 72.0
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 4.6e-98 361.7 256 71.5
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 4.6e-98 361.7 254 71.7
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 4.6e-98 361.7 209 83.7
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 7.9e-98 360.9 208 82.2
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 2.0e-96 356.3 453 46.6
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 7.4e-96 354.4 250 69.2
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 9.7e-96 354.0 280 66.8
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 2.2e-95 352.8 220 79.1
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 3.7e-95 352.1 250 67.2
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 4.1e-94 348.6 211 80.6
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 5.9e-93 344.7 258 70.5
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 5.9e-93 344.7 250 67.6
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 6.1e-90 334.7 250 64.8
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 1.1e-88 330.5 194 80.9
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 2.0e-88 329.7 237 67.1
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 1.7e-87 326.6 199 78.9
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 2.8e-87 325.9 249 68.3
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 9.1e-86 320.9 251 64.9
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.2e-85 320.5 242 67.4
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 1.6e-82 310.1 269 62.1
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 2.3e-81 306.2 265 61.9
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 2.6e-80 302.8 206 74.3
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 3.1e-78 295.8 250 59.2
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.0e-76 290.8 272 58.5
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 1.0e-76 290.8 161 90.7
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 1.7e-76 290.0 336 52.4
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.9e-75 286.6 210 67.6
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 4.2e-75 285.4 254 61.4
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 5.2e-73 278.5 161 83.2
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 2.6e-72 276.2 170 80.0
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 1.6e-69 266.9 208 64.4
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 7.7e-69 264.6 249 51.0
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 1.0e-68 264.2 247 52.2
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 8.0e-66 254.6 284 51.8
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 2.6e-64 249.6 232 54.7
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 1.0e-60 237.7 206 63.1
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 3.3e-59 232.6 145 80.7
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 6.8e-57 224.9 180 62.8
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 1.3e-52 210.7 147 70.1
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 6.6e-44 181.8 112 74.1
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 1.9e-43 180.3 116 75.0
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 2.0e-40 170.2 133 68.4
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 3.0e-36 156.4 91 80.2
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 3.1e-33 146.4 174 47.7
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 2.0e-32 143.7 94 73.4
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 2.9e-31 139.8 254 40.2
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-28 131.0 102 65.7
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 8.7e-12 75.1 53 67.9


User provided reference genes

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