Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 2.0e-106 389.0 190 100.0
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 1.3e-73 280.0 190 72.1
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 6.8e-70 267.7 203 70.4
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 2.9e-68 262.3 165 75.2
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 1.1e-67 260.4 197 68.0
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 7.8e-66 254.2 190 66.8
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 1.2e-58 230.3 199 59.8
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 2.7e-58 229.2 191 62.3
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 2.7e-58 229.2 191 62.3
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 4.6e-58 228.4 190 62.1
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 2.3e-57 226.1 191 61.8
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 3.9e-57 225.3 199 60.8
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 6.6e-57 224.6 190 62.1
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 6.6e-57 224.6 209 57.9
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 1.9e-56 223.0 199 60.8
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 3.3e-56 222.2 206 56.3
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 4.3e-56 221.9 215 55.8
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 5.6e-56 221.5 203 58.1
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 7.3e-56 221.1 211 60.7
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 9.6e-56 220.7 182 62.6
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 9.6e-56 220.7 208 60.1
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 2.1e-55 219.5 188 59.0
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.8e-55 219.2 205 57.1
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 2.8e-55 219.2 175 66.3
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 1.1e-54 217.2 205 57.6
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 2.4e-54 216.1 171 61.4
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 4.0e-54 215.3 205 54.6
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 6.9e-54 214.5 182 57.7
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 2.0e-53 213.0 172 61.0
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 7.6e-53 211.1 195 59.0
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.7e-52 209.9 206 57.8
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 2.9e-52 209.1 190 60.5
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 1.4e-51 206.8 200 57.0
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 4.2e-51 205.3 183 57.9
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 9.3e-51 204.1 197 57.4
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 1.0e-49 200.7 191 58.1
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 2.3e-49 199.5 136 70.6
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 2.3e-49 199.5 136 70.6
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 3.3e-48 195.7 237 48.9
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 5.6e-48 194.9 208 51.9
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 7.3e-48 194.5 188 58.0
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 1.3e-47 193.7 209 51.7
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 1.6e-47 193.4 179 55.3
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 1.6e-47 193.4 135 67.4
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 2.1e-47 193.0 182 56.6
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 2.1e-47 193.0 195 54.9
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 2.8e-47 192.6 173 56.1
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 2.8e-47 192.6 182 56.6
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 4.8e-47 191.8 171 57.9
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 1.1e-46 190.7 191 53.9
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 1.1e-46 190.7 204 52.0
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 1.4e-46 190.3 163 56.4
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 1.4e-46 190.3 182 53.8
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 2.4e-46 189.5 213 54.5
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 5.3e-46 188.3 187 52.4
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 6.9e-46 188.0 96 83.3
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 1.5e-45 186.8 185 51.4
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 1.5e-45 186.8 186 55.4
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.5e-45 186.8 186 52.7
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 2.0e-45 186.4 186 53.2
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 2.6e-45 186.0 170 58.8
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 9.9e-45 184.1 134 67.2
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 1.3e-44 183.7 184 55.4
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 3.2e-43 179.1 113 72.6
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 3.2e-43 179.1 205 51.2
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 3.2e-43 179.1 203 51.7
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 4.2e-43 178.7 178 55.1
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 1.2e-42 177.2 207 50.2
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 2.1e-42 176.4 113 69.0
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 2.1e-42 176.4 199 50.3
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 2.7e-42 176.0 111 67.6
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 3.5e-42 175.6 170 54.1
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 3.5e-42 175.6 100 75.0
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 1.0e-41 174.1 206 50.5
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 2.3e-41 172.9 169 53.8
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 3.9e-41 172.2 117 67.5
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 6.7e-41 171.4 212 48.6
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 8.7e-41 171.0 171 55.0
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 1.1e-40 170.6 186 50.5
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 1.1e-40 170.6 212 49.1
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 1.5e-40 170.2 170 53.5
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 2.5e-40 169.5 122 64.8
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 2.1e-39 166.4 163 52.8
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.1e-39 166.4 127 65.4
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 6.2e-39 164.9 114 65.8
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 6.2e-39 164.9 150 56.0
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 1.4e-38 163.7 109 69.7
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 2.4e-38 162.9 194 45.4
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 9.0e-38 161.0 125 62.4
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 9.0e-38 161.0 159 55.3
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 9.0e-38 161.0 160 54.4
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.3e-36 157.1 159 54.1
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 5.5e-35 151.8 175 46.3
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 9.3e-35 151.0 78 80.8
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 1.1e-32 144.1 93 66.7
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 3.7e-31 139.0 170 47.1
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 6.9e-30 134.8 109 52.3
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 9.0e-30 134.4 139 54.0
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 1.5e-29 133.7 106 56.6
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 7.6e-29 131.3 149 50.3
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 2.2e-28 129.8 101 57.4
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 1.4e-27 127.1 87 63.2
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 2.5e-27 126.3 101 54.5
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 5.5e-27 125.2 148 50.0
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 3.5e-26 122.5 209 42.1
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 6.7e-25 118.2 168 43.5
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 1.0e-20 104.4 72 62.5
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 5.5e-19 98.6 130 50.0
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 5.5e-19 98.6 128 50.8
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 1.2e-18 97.4 116 49.1
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.4e-17 94.0 74 63.5
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 9.7e-16 87.8 131 47.3
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 8.2e-15 84.7 140 43.6
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 3.2e-11 72.8 128 41.4
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 1.3e-07 60.8 101 33.7


User provided reference genes

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