Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 2.0e-64 248.8 117 100.0
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 9.1e-57 223.4 114 89.5
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.6e-56 222.6 117 88.9
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 5.0e-55 217.6 117 85.5
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 8.5e-55 216.9 117 85.5
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 8.0e-53 210.3 113 85.8
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.4e-52 209.5 113 85.0
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.0e-52 208.4 114 83.3
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.0e-52 208.0 114 83.3
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.0e-52 208.0 113 84.1
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.0e-52 208.0 114 83.3
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.0e-52 208.0 113 84.1
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 5.2e-52 207.6 117 82.1
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 6.7e-52 207.2 113 83.2
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.7e-52 207.2 115 80.9
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 8.8e-52 206.8 115 80.9
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 1.2e-51 206.5 113 85.0
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.5e-51 206.1 114 82.5
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 2.0e-51 205.7 114 84.2
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 3.3e-51 204.9 112 82.1
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.3e-51 204.9 112 82.1
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.4e-51 204.5 113 80.5
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 4.4e-51 204.5 117 81.2
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 5.7e-51 204.1 113 80.5
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.7e-51 204.1 113 80.5
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 9.7e-51 203.4 112 82.1
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 1.3e-50 203.0 112 81.2
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.7e-50 202.6 116 78.4
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.7e-50 202.6 113 79.6
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.7e-50 202.6 114 82.5
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 2.2e-50 202.2 116 80.2
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.8e-50 201.8 118 80.5
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 2.8e-50 201.8 110 83.6
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 3.7e-50 201.4 116 80.2
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 3.7e-50 201.4 118 79.7
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 3.7e-50 201.4 116 78.4
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.7e-50 201.4 113 79.6
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.7e-50 201.4 112 81.2
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 4.8e-50 201.1 117 79.5
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 8.2e-50 200.3 111 82.9
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 8.2e-50 200.3 114 78.1
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 8.2e-50 200.3 114 78.1
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 8.2e-50 200.3 112 79.5
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 8.2e-50 200.3 115 80.9
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 1.1e-49 199.9 117 77.8
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.1e-49 199.9 114 80.7
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.1e-49 199.9 114 82.5
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 3.1e-49 198.4 113 78.8
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 3.1e-49 198.4 113 78.8
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 3.1e-49 198.4 113 78.8
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 3.1e-49 198.4 113 78.8
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 3.1e-49 198.4 114 79.8
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 3.1e-49 198.4 117 77.8
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 4.1e-49 198.0 116 78.4
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 4.1e-49 198.0 104 88.5
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.3e-49 197.6 115 78.3
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 5.3e-49 197.6 117 77.8
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 7.0e-49 197.2 113 78.8
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 7.0e-49 197.2 112 77.7
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 7.0e-49 197.2 113 78.8
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 7.0e-49 197.2 113 80.5
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 9.1e-49 196.8 113 77.9
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 9.1e-49 196.8 113 77.9
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 9.1e-49 196.8 111 79.3
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 77.9
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 77.9
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 77.9
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 79.6
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 78.8
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.6e-48 196.1 118 77.1
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.6e-48 196.1 133 72.9
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 1.6e-48 196.1 114 78.1
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 2.0e-48 195.7 113 77.9
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 2.0e-48 195.7 114 78.1
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 2.0e-48 195.7 113 78.8
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.0e-48 195.7 114 77.2
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 3.5e-48 194.9 113 77.9
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.5e-48 194.9 113 78.8
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 4.5e-48 194.5 114 74.6
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 5.9e-48 194.1 114 77.2
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 7.7e-48 193.7 112 75.0
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 7.7e-48 193.7 118 76.3
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 7.7e-48 193.7 114 76.3
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 7.7e-48 193.7 114 76.3
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.3e-47 193.0 114 75.4
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.2e-47 192.2 114 76.3
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 2.9e-47 191.8 115 74.8
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 3.8e-47 191.4 112 75.9
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 6.5e-47 190.7 117 74.4
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 8.5e-47 190.3 115 77.4
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 2.5e-46 188.7 113 76.1
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 4.2e-46 188.0 110 80.0
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 7.2e-46 187.2 114 75.4
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 9.4e-46 186.8 113 74.3
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.6e-45 186.0 110 72.7
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 3.6e-45 184.9 109 78.0
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 3.6e-45 184.9 111 76.6
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 4.7e-45 184.5 111 75.7
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 6.1e-45 184.1 103 79.6
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 8.0e-45 183.7 105 78.1
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.0e-44 183.3 115 73.9
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.4e-44 183.0 108 75.0
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.8e-44 182.6 101 83.2
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 4.0e-44 181.4 106 74.5
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 4.0e-44 181.4 106 74.5
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 2.0e-43 179.1 104 77.9
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 2.6e-43 178.7 148 59.5
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 9.8e-43 176.8 110 71.8
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 9.8e-43 176.8 137 64.2
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 2.2e-42 175.6 99 81.8
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 2.2e-42 175.6 109 75.2
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.1e-41 170.2 100 77.0
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 2.9e-39 165.2 101 73.3
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.1e-38 163.3 178 50.0
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.3e-38 161.8 112 70.5
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.2e-35 153.3 114 61.4
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 2.4e-33 145.6 88 76.1
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 3.1e-33 145.2 117 63.2
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 7.0e-33 144.1 82 79.3
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 5.9e-32 141.0 113 53.1
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 3.8e-31 138.3 112 55.4
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 7.3e-30 134.0 113 57.5
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.6e-29 132.9 107 54.2
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-27 125.2 113 50.4
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 7.8e-24 114.0 102 55.9
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.7e-23 112.8 149 45.0
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 3.9e-23 111.7 60 78.3
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.3e-22 108.6 80 66.2
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 4.3e-22 108.2 57 77.2
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 5.6e-22 107.8 113 48.7
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 7.3e-22 107.5 103 48.5
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 9.5e-22 107.1 58 75.9
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 4.7e-21 104.8 60 76.7
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 8.0e-21 104.0 99 49.5
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.3e-20 102.4 57 87.7
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 2.0e-19 99.4 52 92.3
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 7.5e-19 97.4 96 49.0
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 3.7e-18 95.1 80 61.2
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 5.1e-15 84.7 55 74.5
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 1.4e-12 76.6 55 61.8
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 1.5e-11 73.2 46 67.4
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 2.4e-09 65.9 96 36.5


User provided reference genes

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