Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 2.5e-184 648.7 329 100.0
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 4.4e-109 398.7 292 72.9
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 3.0e-105 386.0 287 70.7
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 5.8e-101 371.7 291 69.4
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.7e-100 370.2 303 69.0
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.7e-100 370.2 303 69.0
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 4.2e-99 365.5 295 66.1
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 1.2e-98 364.0 317 63.1
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 2.7e-98 362.8 295 68.1
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.7e-98 362.8 301 65.8
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 3.5e-98 362.5 293 68.9
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 6.0e-98 361.7 242 76.0
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 7.9e-98 361.3 311 64.6
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 7.9e-98 361.3 284 66.9
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.8e-97 360.1 285 67.4
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 2.3e-97 359.8 255 73.7
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 3.9e-97 359.0 233 80.7
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 8.7e-97 357.8 300 65.7
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 2.5e-96 356.3 234 77.4
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 4.3e-96 355.5 285 67.0
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 7.4e-96 354.8 217 81.6
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 7.4e-96 354.8 221 79.6
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 1.3e-95 354.0 259 73.4
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.8e-95 352.8 281 68.0
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 4.8e-95 352.1 297 65.3
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 4.8e-95 352.1 222 78.4
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 1.1e-94 350.9 289 66.4
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 1.1e-94 350.9 246 73.6
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 3.1e-94 349.4 296 63.2
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 4.0e-94 349.0 217 80.6
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.0e-94 349.0 235 76.2
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 6.9e-94 348.2 234 76.1
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 9.0e-94 347.8 282 66.3
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 1.2e-93 347.4 226 78.8
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.5e-93 347.1 230 78.7
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.5e-93 347.1 232 75.4
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 1.5e-93 347.1 246 72.0
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 2.0e-93 346.7 246 71.5
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 2.6e-93 346.3 243 72.8
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 2.6e-93 346.3 232 75.0
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 2.6e-93 346.3 282 66.7
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.4e-93 345.9 235 75.7
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 3.4e-93 345.9 221 78.3
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 3.4e-93 345.9 244 75.0
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 4.5e-93 345.5 230 75.2
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 4.5e-93 345.5 230 76.5
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 5.8e-93 345.1 232 75.0
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 5.8e-93 345.1 232 75.0
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 7.6e-93 344.7 295 63.4
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 7.6e-93 344.7 230 77.4
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 9.9e-93 344.4 219 79.9
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.7e-92 343.6 235 75.3
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 1.7e-92 343.6 282 64.5
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 2.2e-92 343.2 214 80.4
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 2.2e-92 343.2 279 65.2
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 2.9e-92 342.8 249 70.7
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.9e-92 342.8 231 74.9
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.9e-92 342.8 281 65.5
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 4.9e-92 342.0 213 82.2
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 4.9e-92 342.0 232 73.7
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 1.4e-91 340.5 232 73.7
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 2.4e-91 339.7 248 69.8
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 2.4e-91 339.7 221 78.3
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 1.2e-90 337.4 236 72.9
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 3.5e-90 335.9 293 63.1
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 4.6e-90 335.5 247 70.0
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 7.9e-90 334.7 220 75.9
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 1.0e-89 334.3 229 76.0
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 1.3e-89 334.0 213 79.8
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 1.3e-89 334.0 224 73.7
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 1.8e-89 333.6 232 72.4
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 5.1e-89 332.0 229 72.1
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 1.1e-88 330.9 293 62.8
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 1.5e-88 330.5 285 60.7
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 2.5e-88 329.7 199 81.9
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 7.4e-88 328.2 242 70.2
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.3e-87 327.4 214 75.2
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 1.3e-87 327.4 216 75.0
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 1.6e-87 327.0 282 62.4
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 6.2e-87 325.1 216 75.0
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 9.0e-86 321.2 204 76.0
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 1.2e-85 320.9 223 73.1
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.0e-85 320.1 235 72.8
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 4.9e-84 315.5 265 65.3
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.5e-83 313.2 183 80.3
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 4.2e-83 312.4 277 61.7
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 5.5e-83 312.0 214 74.8
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 7.1e-83 311.6 183 79.2
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 2.3e-81 306.6 255 62.0
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 5.1e-81 305.4 232 69.0
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.9e-80 303.5 208 72.6
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 3.7e-79 299.3 250 64.4
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 5.9e-77 292.0 372 49.7
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 7.6e-77 291.6 190 74.7
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 7.6e-77 291.6 191 73.3
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.4e-75 287.3 226 65.0
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 9.4e-75 284.6 260 61.9
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.8e-73 280.4 204 69.1
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 3.9e-73 279.3 220 65.9
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 8.8e-73 278.1 238 66.0
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 3.3e-72 276.2 192 69.8
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 4.8e-71 272.3 284 56.0
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 7.7e-69 265.0 208 62.5
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 6.5e-68 261.9 163 79.1
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 4.4e-56 222.6 201 61.7
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 5.7e-56 222.2 121 86.8
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 6.3e-55 218.8 243 53.9
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 3.6e-50 203.0 139 75.5
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 2.0e-45 187.2 195 49.7
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 1.7e-44 184.1 233 49.8
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 1.9e-43 180.6 221 45.7
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 5.5e-43 179.1 188 58.5
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 1.0e-41 174.9 215 45.1
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 3.0e-41 173.3 118 74.6
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 5.7e-40 169.1 97 82.5
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 3.7e-39 166.4 97 81.4
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 4.7e-34 149.4 191 52.4
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.4e-33 147.9 80 86.2
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 5.7e-32 142.5 287 37.6
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 5.7e-32 142.5 195 46.7
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 3.7e-31 139.8 76 85.5
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 4.3e-27 126.3 78 76.9
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 5.6e-27 125.9 77 79.2
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.5e-19 100.5 143 49.0
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 2.8e-18 97.1 79 67.1
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 2.9e-15 87.0 57 73.7
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 2.9e-15 87.0 50 80.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 3.7e-15 86.7 51 78.4
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 1.4e-14 84.7 65 64.6
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 4.1e-14 83.2 48 79.2
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 4.6e-13 79.7 55 70.9
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.7e-12 77.8 47 74.5
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 8.9e-09 65.5 124 40.3
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 4.4e-08 63.2 47 66.0


User provided reference genes

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