Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.3e-190 669.8 416 100.0
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 1.2e-130 470.7 414 74.2
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 1.2e-124 450.7 398 72.4
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.1e-115 421.0 422 61.4
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.1e-115 421.0 410 63.7
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 9.9e-114 414.5 426 60.6
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 8.4e-113 411.4 430 59.3
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 1.1e-112 411.0 385 67.3
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 7.1e-112 408.3 440 60.7
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.0e-110 404.4 402 63.9
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 5.1e-110 402.1 441 57.8
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.5e-109 400.6 464 56.7
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 3.3e-109 399.4 394 60.9
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 5.6e-109 398.7 441 58.0
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 2.1e-108 396.7 394 60.9
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.8e-108 396.4 425 58.1
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.6e-108 396.0 425 58.1
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 6.2e-108 395.2 409 65.5
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.1e-107 394.4 409 58.7
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 2.0e-106 390.2 433 56.8
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 2.6e-106 389.8 419 58.2
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 2.6e-106 389.8 437 56.3
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 5.8e-106 388.7 418 59.1
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 7.6e-106 388.3 436 56.7
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 9.9e-106 387.9 423 56.7
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 3.8e-105 386.0 424 58.0
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.9e-105 385.6 412 58.5
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 3.2e-104 382.9 454 55.9
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 5.4e-104 382.1 462 57.8
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 1.2e-103 380.9 459 54.2
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 2.7e-103 379.8 460 54.1
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.7e-103 379.8 455 54.1
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 3.5e-103 379.4 409 57.0
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.0e-102 377.9 449 54.8
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 1.3e-102 377.5 421 57.2
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.8e-102 377.1 437 56.8
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.8e-102 377.1 460 53.9
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.8e-102 377.1 453 55.2
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 3.0e-102 376.3 446 55.2
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 3.9e-102 375.9 421 56.5
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 5.1e-102 375.6 470 53.4
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 4.3e-101 372.5 439 55.8
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 5.3e-99 365.5 400 58.2
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 1.2e-98 364.4 317 68.8
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 1.2e-98 364.4 422 56.4
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 2.0e-98 363.6 425 52.5
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 4.5e-98 362.5 407 55.8
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 5.8e-98 362.1 413 55.0
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 9.9e-98 361.3 410 56.3
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.3e-97 360.9 415 55.7
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.2e-97 360.1 422 54.7
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 2.9e-97 359.8 402 55.5
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 4.9e-97 359.0 422 55.9
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.1e-96 357.8 439 52.8
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 4.2e-96 355.9 401 55.9
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 4.2e-96 355.9 401 55.9
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 9.3e-96 354.8 397 57.9
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 1.2e-95 354.4 413 55.9
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 1.2e-95 354.4 413 55.9
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.2e-95 354.4 441 56.2
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 2.7e-95 353.2 409 55.7
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 2.7e-95 353.2 386 57.0
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 2.3e-94 350.1 429 54.1
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 3.9e-94 349.4 454 50.2
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 3.9e-94 349.4 397 56.4
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 5.1e-94 349.0 406 54.2
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 2.5e-93 346.7 432 56.2
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 5.6e-93 345.5 398 54.0
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 8.1e-92 341.7 427 52.5
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 3.1e-91 339.7 434 53.2
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 9.0e-91 338.2 412 52.2
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 9.0e-91 338.2 454 50.4
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.0e-89 334.7 405 52.8
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 3.8e-89 332.8 466 50.4
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 1.9e-88 330.5 415 51.1
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 3.2e-88 329.7 486 47.9
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 7.9e-87 325.1 380 53.2
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 1.9e-85 320.5 457 49.2
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 3.3e-85 319.7 274 64.6
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 5.7e-85 318.9 448 49.3
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 7.4e-85 318.5 510 48.2
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 1.6e-84 317.4 415 51.3
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.8e-84 316.6 469 46.9
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 6.9e-83 312.0 423 50.4
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 1.3e-81 307.8 422 47.6
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 6.7e-78 295.4 427 49.2
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.9e-77 293.9 452 50.7
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 4.3e-77 292.7 339 53.7
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.8e-75 287.3 412 49.5
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.2e-74 284.6 399 46.1
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 9.7e-69 265.0 421 45.4
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 1.3e-68 264.6 256 64.1
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 9.1e-67 258.5 457 43.5
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 4.5e-66 256.1 444 42.3
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 3.8e-65 253.1 446 43.9
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 1.6e-63 247.7 449 41.6
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 2.7e-63 246.9 296 52.4
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 2.7e-63 246.9 424 43.9
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 7.9e-63 245.4 461 41.4
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 7.4e-61 238.8 461 40.8
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 2.8e-60 236.9 424 41.3
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 2.0e-58 230.7 233 59.7
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 3.5e-58 229.9 391 44.0
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 9.4e-56 221.9 443 41.1
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.2e-53 214.9 279 55.9
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.3e-52 211.5 313 44.4
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.7e-52 211.1 255 49.4
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 2.3e-41 174.1 366 37.4
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 8.6e-41 172.2 409 36.4
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.8e-38 164.5 467 35.8
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 4.7e-31 139.8 231 44.2
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 3.0e-30 137.1 279 37.3
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.3e-28 131.7 323 36.8
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 4.1e-27 126.7 88 78.4
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.5e-24 117.5 480 30.2
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.2e-23 115.2 88 70.5
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.2e-23 115.2 88 70.5
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 5.2e-22 109.8 93 68.8
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 5.2e-22 109.8 93 68.8
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 2.0e-21 107.8 179 43.6
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 1.6e-15 88.2 87 58.6
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 3.4e-13 80.5 267 29.2
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 1.9e-11 74.7 50 78.0
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 4.1e-11 73.6 194 33.5
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 3.5e-10 70.5 244 29.5
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 4.7e-07 60.1 164 32.3
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 6.8e-06 56.2 71 49.3


User provided reference genes

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