Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 2.3e-246 855.1 435 100.0
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 2.8e-127 459.5 387 63.6
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 2.0e-117 426.8 393 59.5
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 1.9e-115 420.2 390 58.7
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 1.1e-110 404.4 381 55.9
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 1.2e-106 391.0 379 55.1
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 4.7e-106 389.0 383 54.8
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 6.1e-106 388.7 385 53.0
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 1.1e-104 384.4 378 54.0
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 4.4e-104 382.5 387 53.7
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 1.7e-103 380.6 349 58.2
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 4.1e-102 375.9 386 53.1
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 5.3e-102 375.6 388 52.3
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 7.0e-102 375.2 299 62.2
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 9.1e-102 374.8 366 53.6
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 1.5e-101 374.0 344 57.0
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 3.5e-101 372.9 384 51.8
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 4.5e-101 372.5 388 53.1
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 5.9e-101 372.1 383 54.0
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 1.0e-100 371.3 345 56.2
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.7e-100 370.5 384 52.1
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 2.2e-100 370.2 294 61.6
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.9e-100 369.8 363 55.4
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 3.8e-100 369.4 387 50.6
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 6.5e-100 368.6 291 61.5
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 6.5e-100 368.6 339 57.8
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 3.2e-99 366.3 385 52.5
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 4.2e-99 365.9 383 51.4
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 5.5e-99 365.5 351 55.8
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 7.2e-99 365.2 299 61.2
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 9.4e-99 364.8 379 51.2
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 1.2e-98 364.4 295 60.3
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 1.6e-98 364.0 291 60.1
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 2.7e-98 363.2 383 52.2
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 2.7e-98 363.2 344 52.9
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.7e-98 363.2 372 53.5
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 3.6e-98 362.8 372 53.5
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 3.6e-98 362.8 345 56.2
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 4.7e-98 362.5 385 52.7
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 4.7e-98 362.5 379 51.7
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 6.1e-98 362.1 383 50.7
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 3.9e-97 359.4 345 55.9
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 5.2e-97 359.0 351 50.4
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 6.7e-97 358.6 387 51.4
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 8.8e-97 358.2 345 55.9
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.1e-96 357.8 375 50.4
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 1.1e-96 357.8 369 50.7
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.5e-96 357.5 390 49.0
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 3.3e-96 356.3 310 56.8
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.7e-95 354.0 380 49.5
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 1.7e-95 354.0 376 50.5
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 8.2e-95 351.7 364 53.0
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 3.1e-94 349.7 323 55.1
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 3.1e-94 349.7 285 61.4
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 4.1e-94 349.4 310 55.8
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 4.1e-94 349.4 310 55.8
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 2.6e-93 346.7 341 52.8
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 2.6e-93 346.7 315 56.8
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 1.0e-92 344.7 306 54.9
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 2.2e-92 343.6 296 59.5
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 2.2e-92 343.6 305 57.4
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 3.8e-92 342.8 386 46.4
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 5.0e-92 342.4 393 46.8
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 6.5e-92 342.0 385 48.3
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 6.5e-92 342.0 361 51.8
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 1.9e-91 340.5 421 48.0
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 2.5e-91 340.1 284 59.5
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 4.2e-91 339.3 377 48.3
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 7.2e-91 338.6 348 50.0
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 9.4e-91 338.2 305 56.4
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 1.6e-90 337.4 368 47.6
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 3.6e-90 336.3 303 56.8
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 4.7e-90 335.9 403 45.4
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 4.7e-90 335.9 314 52.9
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 1.4e-89 334.3 369 47.7
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 1.4e-89 334.3 364 50.3
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.8e-89 334.0 383 50.9
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 4.0e-89 332.8 381 48.0
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 8.8e-89 331.6 306 54.9
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 8.8e-89 331.6 306 54.9
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 2.6e-88 330.1 307 55.7
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 5.4e-86 322.4 374 46.8
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 9.1e-86 321.6 294 52.4
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 9.4e-83 311.6 290 54.1
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 1.6e-82 310.8 293 54.6
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 2.1e-82 310.5 283 54.4
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 6.1e-82 308.9 264 55.7
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 8.8e-81 305.1 330 49.1
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 1.1e-78 298.1 277 52.3
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 2.4e-78 297.0 258 55.4
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 5.4e-78 295.8 326 47.9
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 3.3e-75 286.6 233 61.4
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 4.4e-72 276.2 338 45.3
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 7.5e-72 275.4 294 52.4
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 2.9e-71 273.5 293 49.1
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 3.2e-70 270.0 380 42.1
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 3.9e-68 263.1 232 55.6
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 3.1e-65 253.4 307 40.7
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.5e-64 251.1 331 40.5
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 1.1e-62 245.0 295 43.7
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 4.6e-61 239.6 263 54.4
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.3e-60 238.0 295 44.4
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 2.7e-53 213.8 215 51.6
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 1.1e-51 208.4 265 48.7
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 4.0e-49 199.9 113 79.6
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 8.4e-47 192.2 341 37.0
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 1.4e-46 191.4 309 39.2
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 1.9e-46 191.0 289 42.2
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 7.1e-46 189.1 341 36.7
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 1.6e-45 188.0 274 42.3
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 7.8e-45 185.7 295 40.7
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 2.3e-44 184.1 303 39.6
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 8.6e-44 182.2 112 72.3
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 3.3e-43 180.3 309 35.9
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 8.1e-42 175.6 134 61.2
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 5.2e-41 172.9 173 52.6
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 2.6e-40 170.6 180 50.0
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 9.0e-33 145.6 107 57.0
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 2.4e-30 137.5 167 41.9
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 4.5e-24 116.7 124 51.6
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 8.4e-23 112.5 165 38.2
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 4.2e-22 110.2 126 46.8
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 1.6e-21 108.2 70 67.1
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.3e-20 105.1 67 65.7
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 1.8e-20 104.8 98 54.1
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 6.7e-20 102.8 62 71.0
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 2.5e-19 100.9 71 60.6
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 3.7e-18 97.1 53 73.6
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.4e-17 94.4 228 31.1
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.4e-17 94.4 70 60.0
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 2.0e-16 91.3 105 47.6
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 4.6e-13 80.1 95 33.7
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 1.1e-11 75.5 53 62.3
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.7e-07 61.6 99 36.4
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 7.2e-06 56.2 49 49.0


User provided reference genes

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