Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 0.0e+00 1488.8 745 100.0
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 0.0e+00 1147.9 743 75.1
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 0.0e+00 1146.0 744 76.2
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 1.1e-309 1066.2 744 71.4
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 6.4e-281 970.7 825 62.9
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 9.3e-280 966.8 747 64.7
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 3.0e-270 935.3 746 63.5
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 7.4e-269 930.6 744 63.4
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 2.1e-268 929.1 745 64.8
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 1.1e-267 926.8 744 64.5
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 5.8e-266 921.0 751 62.8
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 8.4e-265 917.1 769 62.5
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.4e-264 916.4 746 63.0
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.1e-263 912.5 747 61.3
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 1.8e-262 909.4 747 61.6
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.8e-262 909.4 750 62.1
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 2.3e-262 909.1 745 61.3
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 6.7e-262 907.5 767 61.8
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 7.4e-261 904.0 771 61.5
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.6e-260 902.9 747 61.6
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 2.1e-260 902.5 747 61.4
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 2.1e-260 902.5 747 62.5
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 2.0e-258 896.0 746 61.3
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 2.6e-258 895.6 748 61.9
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 3.4e-258 895.2 747 61.2
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 1.9e-256 889.4 749 61.5
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 3.0e-254 882.1 744 60.2
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 4.3e-253 878.2 745 59.5
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 7.4e-253 877.5 748 59.8
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 9.0e-251 870.5 757 59.0
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 2.0e-250 869.4 801 57.7
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 2.9e-249 865.5 746 60.1
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 3.8e-249 865.1 748 60.6
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 6.5e-249 864.4 750 59.9
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 6.5e-249 864.4 747 59.3
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 1.1e-248 863.6 743 59.8
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 2.5e-248 862.4 747 58.8
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 5.5e-248 861.3 753 59.2
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 1.6e-247 859.8 677 64.7
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 4.6e-247 858.2 753 58.6
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 6.1e-247 857.8 747 60.5
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 2.3e-246 855.9 748 58.7
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 3.0e-246 855.5 748 59.4
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 3.0e-246 855.5 747 58.5
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 3.9e-246 855.1 779 57.8
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 5.1e-246 854.7 748 58.6
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 1.1e-245 853.6 743 59.9
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.5e-245 853.2 762 58.5
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 1.9e-245 852.8 749 59.3
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 2.5e-245 852.4 754 59.7
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 2.5e-245 852.4 747 58.4
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 5.7e-245 851.3 748 60.2
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 1.3e-244 850.1 748 59.4
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 2.8e-244 849.0 759 58.2
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 1.8e-243 846.3 749 59.5
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 2.4e-243 845.9 748 59.2
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 1.3e-241 840.1 749 60.1
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 8.5e-241 837.4 747 59.3
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 1.9e-240 836.3 766 58.0
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 1.9e-240 836.3 748 58.8
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 1.9e-240 836.3 663 64.1
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 9.4e-240 833.9 749 59.1
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 9.4e-240 833.9 749 59.1
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 2.1e-239 832.8 753 57.4
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 2.7e-239 832.4 813 54.7
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 6.1e-239 831.2 730 59.5
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 7.9e-239 830.9 747 59.0
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 1.4e-238 830.1 751 58.3
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 1.8e-238 829.7 748 58.6
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.1e-237 827.0 783 56.1
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.5e-237 826.6 779 56.1
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.0e-237 826.2 748 57.9
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.7e-237 824.7 782 55.9
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 7.4e-237 824.3 755 58.8
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 1.7e-236 823.2 744 59.8
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 2.4e-235 819.3 666 62.6
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 4.1e-235 818.5 685 62.9
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 6.9e-235 817.8 766 57.0
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 1.0e-233 813.9 831 53.5
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 2.9e-233 812.4 750 58.3
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 2.9e-233 812.4 745 57.4
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 9.4e-232 807.4 769 56.7
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 1.6e-231 806.6 748 57.2
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 3.7e-228 795.4 743 57.1
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 4.5e-226 788.5 609 64.9
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 1.7e-225 786.6 749 56.6
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 1.6e-223 780.0 755 55.0
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 2.3e-222 776.2 662 59.4
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 2.0e-221 773.1 746 54.8
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 5.7e-221 771.5 745 56.5
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 2.2e-220 769.6 747 54.5
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 3.7e-220 768.8 670 59.1
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 3.1e-219 765.8 671 59.2
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 1.9e-216 756.5 571 67.8
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 2.1e-215 753.1 671 56.8
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 3.7e-212 742.3 743 54.6
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 7.0e-211 738.0 757 53.0
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 3.2e-208 729.2 737 54.1
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 2.5e-200 703.0 763 50.3
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 4.7e-199 698.7 672 55.8
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 4.0e-198 695.7 621 60.1
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 2.5e-192 676.4 747 50.3
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.1e-191 673.3 746 49.6
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 2.6e-189 666.4 659 56.8
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.4e-187 659.8 746 48.8
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 4.6e-186 655.6 623 55.7
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 9.0e-166 588.2 924 39.8
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 4.4e-165 585.9 791 44.5
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.8e-159 565.8 749 44.3
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 1.8e-158 563.9 645 49.1
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 1.9e-155 553.9 577 51.6
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 8.7e-153 545.0 567 52.0
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 1.2e-149 534.6 580 50.3
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 2.1e-146 523.9 617 48.0
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 1.5e-144 517.7 567 50.3
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 4.6e-130 469.5 529 48.0
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.7e-122 443.7 396 58.1
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 9.1e-102 375.6 406 49.8
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.4e-89 335.1 355 53.8
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 2.3e-81 307.8 621 32.9
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 4.0e-73 280.4 617 32.3
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 3.7e-71 273.9 234 57.3
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 5.4e-62 243.4 379 38.5
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.8e-50 204.5 525 32.4
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 1.7e-47 195.3 161 64.0
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.8e-47 194.1 230 45.7
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.8e-47 194.1 230 45.7
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 2.0e-40 171.8 163 54.0
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 7.6e-40 169.9 188 43.6
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 4.2e-38 164.1 150 56.0
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 1.9e-35 155.2 102 75.5
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 2.2e-31 141.7 77 84.4
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 3.8e-31 141.0 77 81.8
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 2.5e-30 138.3 77 80.5
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 4.5e-24 117.5 100 57.0
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 1.8e-20 105.5 56 87.5
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 4.3e-19 100.9 183 37.2
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 1.6e-18 99.0 64 71.9
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 5.0e-15 87.4 78 56.4
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 3.9e-12 77.8 50 68.0
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 3.9e-12 77.8 61 68.9
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 2.8e-10 71.6 91 48.4
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 8.2e-10 70.1 67 49.3
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 2.4e-09 68.6 67 49.3
C05p29450 Brassica napus HOM05D005077 ORTHO05D018175 8.5e-07 60.1 61 52.5
BolC5t31675H Brassica oleracea HOM05D005077 ORTHO05D018175 8.5e-07 60.1 61 52.5
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 8.5e-07 60.1 56 51.8


User provided reference genes

Program Settings