Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 5.1e-268 927.2 463 100.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.1e-217 760.0 463 80.3
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.1e-206 723.4 462 77.1
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 7.0e-185 651.0 468 67.5
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.8e-180 636.3 469 67.0
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.3e-178 630.2 468 65.6
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 7.0e-177 624.4 470 65.3
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 2.4e-169 599.4 464 63.6
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 7.8e-168 594.3 471 62.8
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 6.6e-167 591.3 453 63.1
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 3.6e-165 585.5 472 60.0
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.5e-163 580.1 468 61.8
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.6e-163 579.3 469 61.4
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 7.5e-163 577.8 471 61.8
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.3e-162 577.0 472 59.7
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.9e-162 575.9 464 60.6
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 2.9e-162 575.9 482 60.4
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 4.9e-162 575.1 471 59.2
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 4.9e-162 575.1 469 61.0
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 4.9e-162 575.1 474 60.5
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.1e-161 573.9 468 59.6
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.1e-161 573.9 470 60.6
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.9e-161 573.2 470 60.6
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.2e-161 572.4 471 61.4
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 4.1e-161 572.0 469 60.6
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.0e-160 569.7 471 60.3
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.0e-160 569.7 466 59.4
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 3.5e-160 568.9 468 59.0
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.8e-160 567.8 471 60.1
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 7.8e-160 567.8 471 60.3
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.3e-159 567.0 462 61.5
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.7e-159 566.6 470 60.2
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 3.0e-159 565.8 469 59.3
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 5.0e-159 565.1 476 57.6
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 8.6e-159 564.3 450 62.0
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.1e-158 563.9 384 71.1
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.5e-158 562.8 468 57.7
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.3e-158 562.4 470 60.9
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.6e-158 561.6 469 59.7
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 7.3e-158 561.2 469 58.4
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 7.3e-158 561.2 468 58.3
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.6e-157 560.1 467 60.6
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.1e-157 559.7 462 59.3
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.8e-157 559.3 468 60.5
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.8e-157 559.3 470 61.1
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 4.7e-157 558.5 469 59.9
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 6.2e-157 558.1 468 57.5
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.4e-156 557.0 459 60.3
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.0e-156 555.4 459 59.9
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-156 555.4 467 60.2
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-156 555.4 470 60.0
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 4.0e-156 555.4 450 61.1
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.2e-155 553.9 463 59.4
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 2.0e-155 553.1 473 57.7
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 4.4e-155 552.0 469 60.3
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.7e-154 550.1 464 58.4
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.7e-154 550.1 470 57.0
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.1e-153 547.4 473 58.1
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.4e-153 547.0 452 60.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 1.4e-153 547.0 471 57.1
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 9.2e-153 544.3 461 57.7
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.7e-151 540.0 471 57.5
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 2.3e-151 539.7 470 56.2
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.2e-149 531.6 469 58.4
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.1e-148 530.8 467 57.8
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 8.9e-148 527.7 431 58.9
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.2e-147 527.3 464 56.9
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.9e-145 520.0 478 54.2
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.0e-143 514.2 469 55.9
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 3.9e-143 512.3 453 57.2
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.9e-142 510.0 456 55.9
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 7.3e-142 508.1 451 56.1
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.6e-141 505.8 454 56.8
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.1e-140 504.2 473 53.9
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.2e-136 490.7 453 53.0
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.8e-136 488.0 468 53.2
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 6.6e-135 485.0 466 52.6
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 6.6e-135 485.0 462 52.4
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 9.6e-134 481.1 477 50.7
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.3e-133 480.7 466 54.7
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 8.1e-133 478.0 465 53.1
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 1.5e-131 473.8 465 51.0
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.4e-131 472.2 475 49.3
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.9e-130 469.5 471 52.2
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.9e-129 466.8 475 50.1
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.2e-128 464.2 463 52.1
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.7e-128 463.0 463 51.6
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.7e-128 463.0 469 50.7
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.3e-127 460.7 463 51.6
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 3.0e-127 459.5 461 54.0
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 6.6e-127 458.4 467 49.7
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.3e-126 455.7 465 51.2
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 7.4e-126 454.9 463 50.8
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 2.8e-125 453.0 467 51.8
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.1e-124 451.1 466 51.9
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 6.9e-124 448.4 463 49.7
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 9.0e-124 448.0 460 51.5
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.2e-123 447.6 469 48.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.2e-123 447.6 467 47.8
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 2.6e-123 446.4 461 51.2
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 2.6e-123 446.4 464 50.0
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 3.4e-123 446.0 461 50.8
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 4.5e-123 445.7 460 51.5
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 5.8e-123 445.3 460 51.1
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-122 444.1 461 50.8
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.3e-122 444.1 466 50.9
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 2.2e-122 443.4 460 50.4
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.2e-122 443.4 407 55.3
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-121 440.7 461 51.0
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.4e-121 440.7 472 48.7
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.9e-121 440.3 461 50.1
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 5.5e-121 438.7 461 49.9
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-119 433.7 461 49.5
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-119 433.7 461 49.5
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.0e-119 433.0 455 47.3
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.5e-118 430.6 428 50.2
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 3.3e-118 429.5 443 50.6
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 5.6e-118 428.7 461 47.1
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 9.6e-118 427.9 310 67.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 9.6e-118 427.9 310 67.1
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 6.2e-117 425.2 458 46.7
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 6.2e-117 425.2 447 50.6
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.4e-116 424.1 439 51.0
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.4e-116 424.1 461 45.3
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.4e-116 424.1 447 49.7
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 2.4e-116 423.3 446 50.4
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.1e-116 422.9 444 50.0
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 4.0e-116 422.5 467 46.9
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 5.8e-115 418.7 465 45.2
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.0e-114 417.9 464 47.4
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.3e-114 417.5 444 50.5
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.1e-113 414.5 445 46.1
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 3.2e-113 412.9 461 47.9
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 3.2e-113 412.9 461 47.9
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.2e-113 412.9 440 49.5
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.7e-112 409.8 462 44.8
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 6.0e-112 408.7 461 47.3
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 7.9e-112 408.3 447 49.0
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 7.9e-112 408.3 462 47.2
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 3.0e-111 406.4 461 47.1
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 6.7e-111 405.2 447 48.8
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-110 404.4 461 46.9
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 2.5e-110 403.3 446 47.8
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 2.5e-110 403.3 446 47.8
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 9.6e-110 401.4 445 48.1
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 5.5e-105 385.6 420 46.9
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.5e-97 360.1 430 44.4
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.0e-91 340.5 435 42.8
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.0e-91 340.5 435 43.2
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.4e-91 339.7 441 42.2
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.2e-90 337.0 435 42.3
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.5e-83 312.8 431 39.7
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 8.8e-79 298.5 350 48.3
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 7.0e-76 288.9 445 39.8
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.6e-72 277.7 338 45.3
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 3.1e-68 263.5 204 64.2
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.1e-64 250.8 215 57.7
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.0e-63 246.9 343 38.2
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 2.3e-55 220.7 197 56.9
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 3.0e-55 220.3 197 56.9
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.2e-53 214.2 164 61.0
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 9.5e-49 198.7 159 65.4
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 3.7e-45 186.8 220 44.1
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.1e-39 167.2 299 35.5
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 5.4e-28 129.8 128 45.3
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-22 112.1 301 31.2
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 4.3e-17 93.6 117 50.4
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 4.5e-14 83.6 82 57.3
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 6.4e-13 79.7 84 56.0
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 8.4e-13 79.3 164 32.3
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 9.3e-12 75.9 107 37.4
SGA_v2.0_scaffold44G16823 Striga asiatica HOM05D003903 ORTHO05D403244 1.0e-10 72.4 103 43.7
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.7e-10 69.7 69 50.7
SGA_v2.0_scaffold86G26891 Striga asiatica HOM05D003903 ORTHO05D402899 3.4e-06 57.4 39 59.0


User provided reference genes

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