Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 5.8e-52 207.2 101 100.0
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.9e-19 98.6 65 72.3
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 4.2e-18 94.7 59 76.3
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 7.2e-18 94.0 61 72.1
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 1.2e-17 93.2 59 72.9
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 3.6e-17 91.7 57 71.9
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 3.6e-17 91.7 59 69.5
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 4.7e-17 91.3 59 74.6
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.4e-16 89.7 59 69.5
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 3.0e-16 88.6 59 71.2
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 3.9e-16 88.2 52 75.0
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 3.9e-16 88.2 59 69.5
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 3.9e-16 88.2 58 67.2
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.1e-15 86.7 54 74.1
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 3.3e-15 85.1 63 63.5
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 3.3e-15 85.1 55 76.4
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 4.4e-15 84.7 55 69.1
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 4.4e-15 84.7 59 67.8
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 2.2e-14 82.4 54 72.2
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 2.2e-14 82.4 54 72.2
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.8e-14 82.0 49 73.5
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.8e-14 82.0 49 73.5
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 2.8e-14 82.0 49 73.5
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 2.8e-14 82.0 52 65.4
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 3.7e-14 81.6 51 68.6
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 3.7e-14 81.6 50 68.0
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 3.7e-14 81.6 50 68.0
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 3.7e-14 81.6 50 68.0
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 3.7e-14 81.6 52 73.1
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 4.8e-14 81.3 51 64.7
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 8.2e-14 80.5 59 64.4
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 8.2e-14 80.5 49 75.5
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 8.2e-14 80.5 52 67.3
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.1e-13 80.1 54 68.5
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.1e-13 80.1 55 70.9
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 1.1e-13 80.1 56 64.3
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 1.4e-13 79.7 54 70.4
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 1.8e-13 79.3 49 69.4
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 5.3e-13 77.8 51 66.7
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.3e-13 77.8 51 66.7
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.3e-13 77.8 55 67.3
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 5.3e-13 77.8 49 69.4
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 7.0e-13 77.4 53 62.3
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 9.1e-13 77.0 49 65.3
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 1.2e-12 76.6 49 63.3
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.6e-12 76.3 55 61.8
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 1.0e-11 73.6 49 61.2
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 1.3e-11 73.2 44 77.3
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.7e-11 72.8 71 52.1
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 2.9e-11 72.0 54 59.3
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 3.8e-11 71.6 48 60.4
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 6.5e-11 70.9 62 58.1
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 8.5e-11 70.5 51 64.7
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.1e-10 70.1 62 58.1
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.1e-10 70.1 45 73.3
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.9e-10 69.3 51 60.8
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 1.9e-10 69.3 38 71.1
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 2.5e-10 68.9 58 56.9
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.2e-10 68.2 68 51.5
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 9.4e-10 67.0 40 70.0
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 1.2e-09 66.6 51 58.8
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 1.2e-09 66.6 51 58.8
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 1.2e-09 66.6 51 58.8
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 1.2e-09 66.6 51 58.8
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.2e-09 66.6 93 40.9
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 1.6e-09 66.2 49 59.2
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 3.6e-09 65.1 49 57.1
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 3.6e-09 65.1 49 57.1
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 3.6e-09 65.1 49 57.1
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 3.6e-09 65.1 49 57.1
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 3.6e-09 65.1 52 57.7
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 8.0e-09 63.9 57 49.1
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 8.0e-09 63.9 40 70.0
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 1.0e-08 63.5 51 56.9
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 1.4e-08 63.2 40 65.0
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 3.0e-08 62.0 40 65.0
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 3.0e-08 62.0 47 61.7
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 4.0e-08 61.6 40 65.0
Hund15797 Selenicereus undatus HOM05D007120 ORTHO05D008881 4.0e-08 61.6 47 57.4
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 5.2e-08 61.2 40 65.0
Peaxi162Scf00184g00003 Petunia axillaris HOM05D007120 ORTHO05D008881 8.8e-08 60.5 47 59.6
TAR633G1173 Trochodendron aralioides HOM05D009315 ORTHO05D008839 8.8e-08 60.5 40 75.0
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 1.1e-07 60.1 50 52.0
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 1.1e-07 60.1 49 55.1
Sopen07g008940 Solanum pennellii HOM05D007120 ORTHO05D008881 1.5e-07 59.7 39 74.4
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 3.3e-07 58.5 37 64.9
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 3.3e-07 58.5 37 64.9
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 4.4e-07 58.2 50 52.0
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 4.4e-07 58.2 50 52.0
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 4.4e-07 58.2 37 64.9
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 4.4e-07 58.2 37 64.9
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 4.4e-07 58.2 37 64.9
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 5.7e-07 57.8 43 67.4
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 5.7e-07 57.8 40 57.5
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 7.5e-07 57.4 36 63.9
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 7.5e-07 57.4 38 57.9
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 9.7e-07 57.0 57 50.9
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 9.7e-07 57.0 40 57.5
CBR_g11002 Chara braunii HOM05D007120 ORTHO05D008881 1.3e-06 56.6 58 43.1
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 1.3e-06 56.6 52 59.6
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 1.7e-06 56.2 37 70.3
EL10Ac2g02666 Beta vulgaris HOM05D007120 ORTHO05D008881 2.8e-06 55.5 44 54.5
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 6.3e-06 54.3 38 63.2


User provided reference genes

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