Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 8.0e-146 520.4 260 100.0
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 1.2e-93 347.1 257 69.3
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 3.2e-86 322.4 257 63.0
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 5.5e-86 321.6 255 62.4
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 1.2e-85 320.5 255 66.7
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 5.1e-84 315.1 257 62.3
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 4.3e-83 312.0 253 61.3
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 6.2e-82 308.1 255 62.4
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 6.2e-82 308.1 256 60.5
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 3.8e-79 298.9 256 59.4
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 7.1e-78 294.7 237 63.3
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 1.6e-77 293.5 261 59.0
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 6.0e-77 291.6 253 60.1
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 6.0e-77 291.6 257 58.4
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 6.0e-77 291.6 222 64.9
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 1.3e-76 290.4 257 59.5
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 1.8e-76 290.0 254 61.0
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 3.0e-76 289.3 256 58.2
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 5.1e-76 288.5 257 58.4
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 6.7e-76 288.1 251 59.4
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 6.7e-76 288.1 255 57.3
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 8.7e-76 287.7 257 57.6
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 1.5e-75 287.0 266 56.4
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 1.5e-75 287.0 256 56.2
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 1.9e-75 286.6 257 56.8
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 1.9e-75 286.6 257 59.9
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 3.3e-75 285.8 254 60.2
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 4.3e-75 285.4 186 73.1
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 9.7e-75 284.3 253 59.3
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 1.6e-74 283.5 223 64.6
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 2.1e-74 283.1 255 56.9
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 4.8e-74 282.0 214 65.4
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 6.3e-74 281.6 201 68.2
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 6.3e-74 281.6 255 56.9
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.1e-73 280.8 253 57.7
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 1.4e-73 280.4 214 65.4
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 1.4e-73 280.4 257 57.6
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 4.1e-73 278.9 260 55.4
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 4.1e-73 278.9 252 58.3
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 4.1e-73 278.9 253 57.7
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 5.3e-73 278.5 255 54.5
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 6.9e-73 278.1 195 68.7
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 1.5e-72 276.9 206 65.5
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 1.5e-72 276.9 254 55.5
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 2.6e-72 276.2 255 55.3
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 3.4e-72 275.8 253 56.5
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 7.6e-72 274.6 255 54.1
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 1.3e-71 273.9 253 56.1
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.3e-71 273.9 214 63.6
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 1.3e-71 273.9 192 68.8
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 2.2e-71 273.1 254 53.1
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 8.5e-71 271.2 255 53.3
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 1.4e-70 270.4 253 55.7
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 1.9e-70 270.0 254 54.7
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.5e-70 269.6 214 63.1
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 4.2e-70 268.9 229 59.4
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 4.2e-70 268.9 255 53.3
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 7.2e-70 268.1 255 55.7
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 9.3e-70 267.7 212 61.8
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 1.2e-69 267.3 221 60.6
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 1.2e-69 267.3 199 66.3
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 7.9e-69 264.6 201 64.7
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 7.9e-69 264.6 253 54.2
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 7.9e-69 264.6 214 62.1
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 2.3e-68 263.1 255 56.5
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 6.7e-68 261.5 187 63.6
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 8.7e-68 261.2 201 61.7
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 1.1e-67 260.8 190 64.7
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 1.9e-67 260.0 253 53.4
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 4.3e-67 258.8 213 60.6
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 7.4e-67 258.1 223 60.5
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 7.4e-67 258.1 214 60.3
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 6.3e-66 255.0 251 53.0
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 4.5e-64 248.8 228 57.9
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 1.3e-63 247.3 202 60.4
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 1.7e-63 246.9 226 57.5
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 1.7e-63 246.9 204 60.3
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 5.0e-63 245.4 214 60.3
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 8.5e-63 244.6 222 57.7
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 8.5e-63 244.6 222 57.7
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 1.1e-62 244.2 169 69.2
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.1e-62 244.2 241 55.2
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 4.2e-62 242.3 226 57.1
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 7.2e-62 241.5 215 58.1
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 1.4e-60 237.3 189 63.5
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 1.8e-60 236.9 210 59.5
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 1.5e-59 233.8 212 55.2
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 2.0e-59 233.4 230 55.2
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 3.7e-58 229.2 194 60.3
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 6.3e-58 228.4 194 60.8
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 3.4e-56 222.6 187 58.8
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 8.5e-55 218.0 185 56.8
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 3.2e-54 216.1 142 70.4
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 1.8e-52 210.3 197 52.3
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 5.7e-51 205.3 143 69.2
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 9.7e-51 204.5 180 56.7
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 4.8e-50 202.2 183 54.6
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 3.1e-49 199.5 181 55.2
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 5.9e-48 195.3 254 44.9
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 2.9e-47 193.0 207 46.9
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 5.5e-46 188.7 185 50.8
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 4.7e-45 185.7 178 51.7
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 3.0e-44 183.0 178 50.6
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 7.5e-43 178.3 188 51.6
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 2.9e-39 166.4 214 43.5
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.3e-34 151.0 227 38.3
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 1.4e-33 147.5 165 49.7
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 2.5e-30 136.7 174 46.6
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 2.1e-29 133.7 144 53.5
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 2.3e-28 130.2 88 67.0
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 1.2e-27 127.9 190 40.5
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 3.0e-20 103.2 83 54.2
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 6.4e-18 95.5 166 36.7
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 2.4e-17 93.6 66 65.2
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 9.2e-17 91.7 98 45.9
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 3.9e-15 86.3 153 38.6
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 7.5e-11 72.0 73 50.7
Oeu004139.1 Olea europaea HOM05D007174 ORTHO05D009061 2.3e-07 60.5 89 40.4


User provided reference genes

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