Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 4.1e-179 631.3 328 100.0
SalBow3G1310 Salvia bowleyana HOM05D006394 ORTHO05D008057 9.2e-107 391.0 331 61.0
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 2.3e-105 386.3 341 66.0
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 5.2e-102 375.2 325 68.9
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 3.8e-100 369.0 338 65.1
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 1.4e-99 367.1 328 64.9
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 5.4e-99 365.2 344 64.0
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 1.2e-98 364.0 344 63.7
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 1.7e-97 360.1 346 60.4
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 8.1e-95 351.3 337 61.1
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 1.2e-93 347.4 339 60.8
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 4.9e-92 342.0 329 62.3
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 2.4e-91 339.7 337 60.2
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 1.6e-90 337.0 339 59.9
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 4.6e-90 335.5 343 58.9
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 6.0e-90 335.1 335 59.1
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 2.3e-89 333.2 363 58.4
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 6.6e-89 331.6 380 56.6
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 1.1e-88 330.9 338 59.8
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 7.4e-88 328.2 339 58.1
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 9.6e-88 327.8 338 59.5
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 1.6e-87 327.0 342 59.4
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 2.8e-87 326.2 343 59.5
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 2.8e-87 326.2 342 59.4
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 3.6e-87 325.9 341 58.1
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 1.8e-86 323.6 340 57.9
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 2.4e-86 323.2 322 58.7
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 3.1e-86 322.8 331 60.4
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 3.4e-85 319.3 331 60.1
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 5.8e-85 318.5 331 59.8
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 2.9e-84 316.2 348 57.2
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 3.8e-84 315.8 346 57.2
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 3.8e-84 315.8 341 56.9
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 1.4e-83 313.9 341 58.4
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 7.1e-83 311.6 340 57.4
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 7.1e-83 311.6 342 56.1
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 1.6e-82 310.5 331 58.3
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 3.5e-82 309.3 335 55.8
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 4.6e-82 308.9 341 57.8
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 1.3e-81 307.4 341 58.9
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 3.9e-81 305.8 344 56.7
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 1.1e-80 304.3 304 63.8
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 1.9e-80 303.5 339 57.8
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 1.6e-79 300.4 333 55.6
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 1.6e-79 300.4 333 55.6
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 6.9e-78 295.0 336 53.9
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 2.0e-77 293.5 351 56.4
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 3.4e-77 292.7 342 53.2
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 4.5e-77 292.4 352 56.0
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 4.5e-77 292.4 341 54.3
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 7.6e-77 291.6 346 55.5
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.0e-76 291.2 342 52.9
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 2.9e-76 289.7 349 54.2
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 1.4e-75 287.3 356 55.1
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 3.2e-75 286.2 337 54.9
Lj2C467T3 Lonicera japonica HOM05D006394 ORTHO05D008057 2.1e-74 283.5 331 48.0
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 3.5e-74 282.7 342 52.9
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.0e-73 281.2 342 52.9
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 1.0e-73 281.2 333 54.7
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 3.0e-73 279.6 345 51.9
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 1.1e-72 277.7 330 54.8
PGSC0003DMG400022563 Solanum tuberosum HOM05D006394 ORTHO05D008057 2.5e-72 276.6 260 57.7
Hma1.2p1_0743F.1_g211600 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 3.7e-71 272.7 327 46.5
vmacro21917 Vaccinium macrocarpon HOM05D006394 ORTHO05D008057 4.1e-70 269.2 341 46.0
CSS0039773 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 2.2e-68 263.5 331 46.8
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 8.5e-68 261.5 297 56.2
Actinidia28701 Actinidia chinensis HOM05D006394 ORTHO05D008057 5.5e-67 258.8 324 46.0
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 3.6e-66 256.1 312 46.2
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 3.6e-66 256.1 333 49.8
QL06p032614 Quercus lobata HOM05D006394 ORTHO05D008057 1.8e-65 253.8 328 44.2
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 1.5e-64 250.8 327 51.1
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 1.9e-64 250.4 269 59.9
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 4.3e-64 249.2 318 54.4
Sed0000291 Sechium edule HOM05D006394 ORTHO05D008057 2.8e-63 246.5 327 42.5
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 6.3e-63 245.4 329 52.0
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 1.1e-62 244.6 327 50.8
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 1.8e-62 243.8 330 50.9
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 2.4e-62 243.4 327 51.7
Cpa.g.sc6.241 Carica papaya HOM05D006394 ORTHO05D008057 3.1e-62 243.0 328 43.0
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 2.0e-61 240.4 324 50.3
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 1.7e-60 237.3 329 49.5
ClCG01G020230 Citrullus lanatus HOM05D006394 ORTHO05D008057 2.9e-60 236.5 314 43.9
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 3.8e-60 236.1 329 49.5
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 1.1e-59 234.6 318 49.1
TAR365G0979 Trochodendron aralioides HOM05D006394 ORTHO05D008057 2.5e-59 233.4 274 49.3
MD02G1133300 Malus domestica HOM05D006394 ORTHO05D008057 9.4e-59 231.5 319 43.3
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 1.6e-58 230.7 325 49.5
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 7.9e-58 228.4 330 49.1
Sabra05G0094200 Salix brachista HOM05D006394 ORTHO05D008057 2.3e-57 226.9 312 41.3
Phvul.003G262300 Phaseolus vulgaris HOM05D006394 ORTHO05D008057 6.7e-57 225.3 265 47.5
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 1.1e-56 224.6 325 47.4
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 2.8e-55 219.9 326 47.2
Manes.01G145300 Manihot esculenta HOM05D006394 ORTHO05D008057 3.1e-54 216.5 249 48.2
TPR.G30047 Trifolium pratense HOM05D006394 ORTHO05D008057 3.1e-54 216.5 340 41.5
TAR133G0002 Trochodendron aralioides HOM05D006394 ORTHO05D008057 4.2e-51 206.1 256 46.5
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 1.4e-49 201.1 291 51.5
Os04g0110600 Oryza sativa ssp. japonica HOM05D006394 ORTHO05D008057 4.8e-47 192.6 272 44.5
SMO347G0374 Selaginella moellendorffii HOM05D006394 ORTHO05D008057 2.6e-45 186.8 330 45.8
Zm00001eb418470 Zea mays HOM05D006394 ORTHO05D008057 4.4e-40 169.5 275 40.0
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 1.3e-39 167.9 310 34.8
Zm00001eb411540 Zea mays HOM05D006394 ORTHO05D008057 4.8e-39 166.0 275 39.3
Zm00001eb089410 Zea mays HOM05D006394 ORTHO05D008057 7.0e-38 162.2 277 39.4
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 2.3e-33 147.1 130 58.5
Hma1.2p1_0589F.1_g184775 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 9.8e-32 141.7 185 42.7
Lsat_1_v5_gn_4_146641 Lactuca sativa HOM05D006394 ORTHO05D008057 1.0e-25 121.7 300 33.3
CDE02G2139 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 1.3e-23 114.8 130 48.5
CSS0034598 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 1.1e-19 101.7 50 86.0
ATR0421G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 1.9e-19 100.9 48 87.5
CBR_g22407 Chara braunii HOM05D006394 ORTHO05D008057 4.3e-19 99.8 170 37.6
Sopen04g013660 Solanum pennellii HOM05D006394 ORTHO05D008057 4.7e-18 96.3 89 56.2
Oeu048467.1 Olea europaea HOM05D006394 ORTHO05D008057 9.8e-16 88.6 99 53.5
Solyc10g038030.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 3.2e-14 83.6 110 44.5
Sopen10g011120 Solanum pennellii HOM05D006394 ORTHO05D008057 2.7e-13 80.5 63 60.3
Sopen04g013620 Solanum pennellii HOM05D006394 ORTHO05D008057 1.1e-11 75.1 85 48.2
BraA02t08936Z Brassica rapa HOM05D001564 ORTHO05D001439 2.0e-08 64.3 161 29.8
TWI34G0224 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 2.6e-08 63.9 154 28.6
MBI05_g15342_MAGBIO Magnolia biondii HOM05D006394 ORTHO05D008057 4.4e-08 63.2 90 42.2
A02p39710 Brassica napus HOM05D001564 ORTHO05D001439 7.5e-08 62.4 161 29.2
Mapoly0019s0131 Marchantia polymorpha HOM05D001564 ORTHO05D001439 7.5e-08 62.4 163 31.9
BcaB07g29995 Brassica carinata HOM05D001564 ORTHO05D001439 9.8e-08 62.0 161 29.2
Manes.03G017100 Manihot esculenta HOM05D001564 ORTHO05D001439 9.8e-08 62.0 168 30.4
Peaxi162Scf00641g00018 Petunia axillaris HOM05D001564 ORTHO05D001439 9.8e-08 62.0 157 29.9
BcaNung07111 Brassica carinata HOM05D001564 ORTHO05D001439 1.7e-07 61.2 161 28.0
C02p59490 Brassica napus HOM05D001564 ORTHO05D001439 1.7e-07 61.2 161 28.0
BolC2t12012H Brassica oleracea HOM05D001564 ORTHO05D001439 1.7e-07 61.2 161 28.0
AL6G37290 Arabidopsis lyrata HOM05D001564 ORTHO05D001439 2.9e-07 60.5 161 28.6
Rhsim01G0076900 Rhododendron simsii HOM05D001564 ORTHO05D001439 2.9e-07 60.5 151 30.5
CBR_g82288 Chara braunii HOM05D006394 ORTHO05D008057 3.7e-07 60.1 34 64.7
Thhalv10005026m.g Eutrema salsugineum HOM05D001564 ORTHO05D001439 3.7e-07 60.1 161 29.8
PGR142G1478 Punica granatum HOM05D001564 ORTHO05D001439 3.7e-07 60.1 155 28.4
Solyc12g006590.3 Solanum lycopersicum HOM05D001564 ORTHO05D001439 3.7e-07 60.1 157 29.9
Ca_15722_v3 Cicer arietinum L. HOM05D001564 ORTHO05D001439 6.4e-07 59.3 169 28.4
Sp2g22040 Schrenkiella parvula HOM05D001564 ORTHO05D001439 6.4e-07 59.3 170 27.6
PGSC0003DMG401020664 Solanum tuberosum HOM05D001564 ORTHO05D001439 8.3e-07 58.9 156 31.4
AT5G25490 Arabidopsis thaliana HOM05D001564 ORTHO05D001439 1.1e-06 58.5 161 29.8
Nitab4.5_0005563g0020 Nicotiana tabacum HOM05D001564 ORTHO05D001439 1.1e-06 58.5 153 28.8
Sopen12g002540 Solanum pennellii HOM05D001564 ORTHO05D001439 1.1e-06 58.5 154 29.2
THA.LOC104809001 Tarenaya hassleriana HOM05D001564 ORTHO05D001439 1.1e-06 58.5 155 29.0
Zm00001eb205550 Zea mays HOM05D001564 ORTHO05D001439 1.1e-06 58.5 156 26.9
Manes.14G130300 Manihot esculenta HOM05D001564 ORTHO05D001439 1.4e-06 58.2 155 31.6
Sopen12g006430 Solanum pennellii HOM05D001564 ORTHO05D001439 1.4e-06 58.2 155 31.0
Atru.chr7.1193 Acer truncatum HOM05D001564 ORTHO05D001439 1.9e-06 57.8 155 28.4
Carub.0006s2335 Capsella rubella HOM05D001564 ORTHO05D001439 2.4e-06 57.4 175 26.9
Ciclev10009893m.g Citrus clementina HOM05D001564 ORTHO05D001439 2.4e-06 57.4 155 27.1
CANSAT11G0701 Cannabis sativa HOM05D001564 ORTHO05D001439 3.2e-06 57.0 156 25.6
TWI63G0584 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 3.2e-06 57.0 157 26.1
unitig_748.g7371 Utricularia gibba HOM05D001564 ORTHO05D001439 3.2e-06 57.0 210 25.2
A06p36200 Brassica napus HOM05D001564 ORTHO05D001439 4.1e-06 56.6 159 28.3
C07p42330 Brassica napus HOM05D001564 ORTHO05D001439 4.1e-06 56.6 159 28.3
BolC7t44762H Brassica oleracea HOM05D001564 ORTHO05D001439 4.1e-06 56.6 159 28.3
BraA06t26541Z Brassica rapa HOM05D001564 ORTHO05D001439 4.1e-06 56.6 159 28.3
Hund26490 Selenicereus undatus HOM05D001564 ORTHO05D001439 4.1e-06 56.6 159 25.2
Lsat_1_v5_gn_5_98101 Lactuca sativa HOM05D001564 ORTHO05D001439 5.4e-06 56.2 153 28.1
ATR0853G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 7.0e-06 55.8 91 36.3
MSTRG.19608 Avicennia marina HOM05D001564 ORTHO05D001439 7.0e-06 55.8 154 28.6
CARHR187900 Cardamine hirsuta HOM05D001564 ORTHO05D001439 7.0e-06 55.8 161 25.5
AUR62011085 Chenopodium quinoa HOM05D001564 ORTHO05D001439 7.0e-06 55.8 152 28.3
Prupe.7G239400 Prunus persica HOM05D001564 ORTHO05D001439 7.0e-06 55.8 152 26.3
Cc11_g01930 Coffea canephora HOM05D001564 ORTHO05D001439 9.2e-06 55.5 160 29.4
ECA234G0565 Erigeron canadensis HOM05D001564 ORTHO05D001439 9.2e-06 55.5 153 28.1
PGR031G3637 Punica granatum HOM05D001564 ORTHO05D001439 9.2e-06 55.5 161 28.0


User provided reference genes

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