Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 3.1e-173 611.7 307 100.0
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 2.2e-94 349.7 305 62.0
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 6.7e-83 311.6 270 63.0
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 4.8e-81 305.4 297 57.9
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.9e-74 283.5 296 52.7
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 3.3e-74 282.7 297 51.2
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 5.3e-72 275.4 293 51.5
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.9e-70 269.6 305 47.9
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.1e-69 267.7 298 51.3
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 4.2e-69 265.8 297 52.2
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 5.5e-69 265.4 300 51.3
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.2e-68 264.2 304 48.4
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.6e-68 263.8 309 50.8
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 7.9e-68 261.5 296 51.4
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.0e-67 261.2 300 48.0
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.8e-67 260.4 294 48.6
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 2.3e-67 260.0 294 49.3
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 3.0e-67 259.6 296 48.0
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 3.0e-67 259.6 306 48.4
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 3.0e-67 259.6 294 49.0
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 5.1e-67 258.8 299 49.5
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 6.7e-67 258.5 293 49.1
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.1e-66 257.7 297 49.2
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 4.3e-66 255.8 299 47.8
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 4.3e-66 255.8 296 49.0
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 4.3e-66 255.8 306 48.4
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 7.4e-66 255.0 293 52.6
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 9.7e-66 254.6 297 49.5
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.3e-65 254.2 293 46.1
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 6.3e-65 251.9 297 45.8
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 8.2e-65 251.5 293 47.4
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 8.2e-65 251.5 287 50.2
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.1e-64 251.1 293 48.8
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.8e-64 250.4 296 48.0
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.8e-64 250.4 286 49.0
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 3.1e-64 249.6 295 47.5
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 5.3e-64 248.8 304 48.0
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 2.6e-63 246.5 296 48.3
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.6e-63 246.5 290 49.0
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 1.3e-62 244.2 287 46.0
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 2.2e-62 243.4 289 47.1
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.9e-62 243.0 302 47.7
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 5.0e-62 242.3 295 46.4
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.1e-61 241.1 291 47.4
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.9e-61 240.4 294 46.3
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 4.2e-61 239.2 299 48.2
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.2e-61 239.2 299 48.2
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 9.4e-61 238.0 299 48.2
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 1.6e-60 237.3 296 48.3
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.6e-60 237.3 294 44.9
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.6e-60 235.7 299 47.8
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 6.1e-60 235.3 297 48.5
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.4e-59 234.2 301 44.5
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.9e-59 232.6 299 46.5
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.9e-59 232.6 296 47.0
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 5.1e-59 232.3 284 46.1
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 8.8e-59 231.5 288 44.4
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 3.3e-58 229.6 303 43.6
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 9.7e-58 228.0 294 43.5
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.3e-57 227.6 297 47.8
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.8e-57 226.5 296 44.9
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 3.7e-57 226.1 301 42.9
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 4.8e-57 225.7 296 44.9
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 3.1e-56 223.0 291 43.3
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.2e-55 221.1 306 42.2
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.4e-55 219.5 320 43.1
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 7.7e-55 218.4 296 44.6
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.0e-54 218.0 335 40.0
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 6.5e-54 215.3 297 44.4
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.2e-52 211.1 330 39.4
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.4e-51 207.6 277 45.5
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 5.2e-51 205.7 234 49.1
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 5.7e-50 202.2 209 54.5
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 8.2e-49 198.4 288 41.7
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 2.2e-46 190.3 211 51.2
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 2.2e-46 190.3 202 52.5
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 4.2e-45 186.0 290 41.0
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 4.2e-45 186.0 292 41.1
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 5.5e-45 185.7 292 41.1
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 7.2e-45 185.3 288 41.3
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 9.4e-45 184.9 287 41.5
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 8.0e-44 181.8 275 39.6
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.2e-42 177.9 239 48.1
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.6e-42 176.8 228 46.1
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 7.5e-42 175.3 308 35.1
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 5.3e-40 169.1 296 39.9
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 5.3e-40 169.1 217 42.9
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.2e-39 167.9 157 59.2
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 3.2e-37 159.8 192 47.4
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 5.5e-37 159.1 198 46.0
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 9.4e-37 158.3 293 36.2
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.1e-36 157.1 297 34.3
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 4.4e-34 149.4 232 38.8
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 2.2e-33 147.1 257 37.7
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 4.1e-32 142.9 293 35.5
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 4.1e-32 142.9 227 40.1
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.6e-31 141.0 236 40.7
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 2.7e-31 140.2 231 40.7
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 4.5e-31 139.4 166 46.4
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 1.5e-29 134.4 267 34.5
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 9.5e-29 131.7 260 33.1
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 4.4e-26 122.9 220 36.8
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.3e-25 121.3 356 27.5
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.8e-25 120.2 216 37.5
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 3.7e-25 119.8 97 62.9
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 4.5e-23 112.8 243 34.2
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 5.9e-23 112.5 215 33.0
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 2.3e-22 110.5 302 30.8
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 5.0e-22 109.4 185 37.3
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 6.6e-22 109.0 109 56.9
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 3.3e-21 106.7 291 29.2
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 4.3e-21 106.3 137 43.8
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.6e-20 104.4 112 52.7
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 3.0e-19 100.1 79 70.9
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 6.8e-19 99.0 110 50.0
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.2e-18 98.2 124 49.2
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 8.3e-17 92.0 105 47.6
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.1e-16 89.7 81 63.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.1e-16 89.7 81 63.0
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.5e-15 86.7 141 37.6
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.9e-13 80.9 187 32.1
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 9.5e-13 78.6 62 62.9
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 2.8e-12 77.0 62 61.3
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.4e-11 74.7 57 63.2
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 2.9e-09 67.0 49 63.3
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.4e-08 64.7 56 58.9


User provided reference genes

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