Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27064 Avicennia marina HOM05D002932 ORTHO05D003208 5.7e-107 391.0 203 100.0
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 1.3e-39 167.2 143 62.2
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 2.0e-35 153.3 158 58.9
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 1.9e-30 136.7 145 56.6
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 4.8e-29 132.1 149 53.0
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.8e-28 130.2 149 52.3
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 3.1e-28 129.4 146 53.4
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 4.1e-28 129.0 146 54.8
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 9.0e-28 127.9 146 51.4
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 9.0e-28 127.9 144 50.7
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.2e-27 127.5 145 54.5
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.5e-27 127.1 145 55.2
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 2.0e-27 126.7 145 52.4
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 2.9e-26 122.9 146 54.8
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 6.5e-26 121.7 145 50.3
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 8.4e-26 121.3 149 50.3
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 1.1e-25 120.9 146 50.7
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 1.9e-25 120.2 149 49.7
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 2.5e-25 119.8 148 51.4
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 7.2e-25 118.2 148 51.4
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 7.2e-25 118.2 142 50.7
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 9.3e-25 117.9 152 48.0
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 1.2e-24 117.5 148 50.7
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 2.1e-24 116.7 141 49.6
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 2.7e-24 116.3 149 47.7
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 2.7e-24 116.3 146 49.3
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 3.5e-24 115.9 146 50.7
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 4.6e-24 115.5 151 51.7
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 4.6e-24 115.5 149 47.7
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 6.1e-24 115.2 144 48.6
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 6.1e-24 115.2 159 49.1
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 6.1e-24 115.2 148 47.3
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 7.9e-24 114.8 149 47.0
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 1.3e-23 114.0 144 48.6
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.8e-23 113.6 141 48.9
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 2.3e-23 113.2 145 51.0
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 5.1e-23 112.1 145 48.3
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.9e-22 110.2 156 46.8
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.9e-22 110.2 156 46.8
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 1.9e-22 110.2 149 45.6
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 1.9e-22 110.2 143 49.7
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 2.5e-22 109.8 165 44.8
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 2.5e-22 109.8 156 46.8
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.5e-22 109.8 156 46.2
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.5e-22 109.8 156 46.8
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 5.7e-22 108.6 143 47.6
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 7.4e-22 108.2 143 46.2
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 9.7e-22 107.8 147 49.0
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 9.7e-22 107.8 145 48.3
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 1.3e-21 107.5 143 46.9
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 1.6e-21 107.1 153 47.1
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.2e-21 106.7 146 45.2
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 2.2e-21 106.7 146 45.2
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 2.8e-21 106.3 142 46.5
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 3.7e-21 105.9 152 46.1
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 8.2e-21 104.8 146 50.0
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 1.1e-20 104.4 152 46.1
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 3.1e-20 102.8 147 43.5
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 5.3e-20 102.1 145 44.8
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 9.0e-20 101.3 154 46.1
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 9.0e-20 101.3 150 47.3
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 9.0e-20 101.3 145 46.9
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 2.6e-19 99.8 146 50.0
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 3.4e-19 99.4 148 45.9
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 5.9e-19 98.6 142 46.5
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 1.0e-18 97.8 148 47.3
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 1.0e-18 97.8 145 46.9
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 2.2e-18 96.7 143 43.4
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 2.2e-18 96.7 168 45.2
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 2.9e-18 96.3 146 45.9
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 5.0e-18 95.5 155 43.2
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 5.0e-18 95.5 157 44.6
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 8.5e-18 94.7 149 45.0
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 8.5e-18 94.7 149 45.0
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 1.1e-17 94.4 165 43.0
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 2.5e-17 93.2 158 46.2
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 5.5e-17 92.0 148 43.9
Atru.ctg97_1.61 Acer truncatum HOM05D002932 ORTHO05D003208 9.4e-17 91.3 131 43.5
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 2.7e-16 89.7 153 45.1
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 3.6e-16 89.4 162 42.6
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 3.6e-16 89.4 147 44.9
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 4.6e-16 89.0 156 40.4
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 4.6e-16 89.0 145 43.4
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 7.9e-16 88.2 151 41.7
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 1.0e-15 87.8 149 45.0
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 1.1e-14 84.3 157 41.4
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 7.4e-14 81.6 145 40.0
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 3.7e-13 79.3 152 37.5
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 6.3e-13 78.6 150 40.7
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 8.2e-13 78.2 154 39.6
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 1.4e-12 77.4 143 41.3
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 1.4e-12 77.4 155 39.4
Peaxi162Scf00904g00468 Petunia axillaris HOM05D002932 ORTHO05D003208 1.8e-12 77.0 135 43.0
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 1.2e-11 74.3 146 39.0
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.5e-11 73.9 145 37.9
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 2.0e-11 73.6 149 38.9
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 5.9e-11 72.0 147 39.5
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 5.9e-11 72.0 151 42.4
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 5.9e-11 72.0 143 39.2
CARHR265860 Cardamine hirsuta HOM05D002932 ORTHO05D003208 1.3e-10 70.9 155 39.4
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 1.7e-10 70.5 147 36.1
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 1.7e-10 70.5 147 36.1
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.7e-10 70.5 150 38.0
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 2.2e-10 70.1 146 37.0
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 2.9e-10 69.7 149 42.3
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 6.5e-10 68.6 142 41.5
A03p15470 Brassica napus HOM05D002932 ORTHO05D003208 8.5e-10 68.2 149 35.6
BraA03t10842Z Brassica rapa HOM05D002932 ORTHO05D003208 8.5e-10 68.2 149 35.6
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 1.1e-09 67.8 148 35.8
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.4e-09 67.4 146 39.7
Lsat_1_v5_gn_2_133581 Lactuca sativa HOM05D002932 ORTHO05D003208 1.9e-09 67.0 158 39.2
Nitab4.5_0009102g0020 Nicotiana tabacum HOM05D002932 ORTHO05D003208 1.9e-09 67.0 144 41.0
BcaB01g04222 Brassica carinata HOM05D002932 ORTHO05D003208 2.5e-09 66.6 150 33.3
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 4.2e-09 65.9 150 38.0
Gorai.007G013900 Gossypium raimondii HOM05D002932 ORTHO05D003208 4.2e-09 65.9 147 36.7
PGSC0003DMG400028894 Solanum tuberosum HOM05D002932 ORTHO05D003208 4.2e-09 65.9 45 68.9
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 5.5e-09 65.5 152 37.5
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 5.5e-09 65.5 144 38.9
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 5.5e-09 65.5 146 41.1
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 7.2e-09 65.1 112 45.5
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 7.2e-09 65.1 150 37.3
MELO3C005851.2 Cucumis melo HOM05D002932 ORTHO05D003208 9.4e-09 64.7 153 35.9
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 9.4e-09 64.7 155 36.1
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 9.4e-09 64.7 145 35.2
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 1.6e-08 63.9 152 36.8
CsaV3_5G000930 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.6e-08 63.9 158 37.3
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.6e-08 63.9 147 36.1
Solyc06g036460.4 Solanum lycopersicum HOM05D002932 ORTHO05D003208 2.1e-08 63.5 45 64.4
Carub.0008s1309 Capsella rubella HOM05D002932 ORTHO05D003208 2.7e-08 63.2 147 37.4
ClCG01G000790 Citrullus lanatus HOM05D002932 ORTHO05D003208 2.7e-08 63.2 152 37.5
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 4.7e-08 62.4 149 39.6
Sopen06g012200 Solanum pennellii HOM05D002932 ORTHO05D003208 4.7e-08 62.4 68 51.5
C09p42630 Brassica napus HOM05D002932 ORTHO05D003208 2.3e-07 60.1 149 34.2
BolC9t57139H Brassica oleracea HOM05D002932 ORTHO05D003208 2.3e-07 60.1 149 34.2
BraA02t06216Z Brassica rapa HOM05D002932 ORTHO05D003208 3.0e-07 59.7 147 34.0
Lsat_1_v5_gn_8_6240 Lactuca sativa HOM05D002932 ORTHO05D003208 3.9e-07 59.3 170 35.9
BcaB08g35654 Brassica carinata HOM05D002932 ORTHO05D003208 5.1e-07 58.9 154 36.4
BcaC03g14485 Brassica carinata HOM05D002932 ORTHO05D003208 5.1e-07 58.9 153 35.9
A10p10380 Brassica napus HOM05D002932 ORTHO05D003208 5.1e-07 58.9 158 36.1
C02p19170 Brassica napus HOM05D002932 ORTHO05D003208 5.1e-07 58.9 153 35.9
BraA10t43121Z Brassica rapa HOM05D002932 ORTHO05D003208 5.1e-07 58.9 158 36.1
ECA233G5483 Erigeron canadensis HOM05D002932 ORTHO05D003208 5.1e-07 58.9 120 40.0
A02p11520 Brassica napus HOM05D002932 ORTHO05D003208 6.7e-07 58.5 153 35.9
BcaC04g20524 Brassica carinata HOM05D002932 ORTHO05D003208 8.8e-07 58.2 148 31.1
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 8.8e-07 58.2 148 34.5
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 8.8e-07 58.2 147 34.7
BolC2t08047H Brassica oleracea HOM05D002932 ORTHO05D003208 1.5e-06 57.4 150 35.3
Thecc.01G350800 Theobroma cacao HOM05D002932 ORTHO05D003208 1.5e-06 57.4 158 33.5
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 2.0e-06 57.0 150 34.0
CAN.G204.10 Capsicum annuum HOM05D002932 ORTHO05D003208 4.4e-06 55.8 139 36.7
BcaB05g21990 Brassica carinata HOM05D002932 ORTHO05D003208 5.7e-06 55.5 153 35.9
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 5.7e-06 55.5 133 34.6


User provided reference genes

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