Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 2438.7 1260 100.0
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 0.0e+00 1564.3 1373 64.2
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 0.0e+00 1547.7 1269 67.7
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 0.0e+00 1444.9 1353 60.5
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 0.0e+00 1366.3 1298 60.4
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1221.8 1270 55.5
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1198.0 1265 55.0
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1196.8 1292 53.9
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1184.5 1277 54.3
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 0.0e+00 1163.7 1312 52.4
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 0.0e+00 1137.5 1304 51.6
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1136.7 1306 52.0
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1133.2 1154 55.4
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1132.5 1293 52.6
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 0.0e+00 1130.9 1310 51.5
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1126.3 1312 51.1
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1125.5 1274 52.4
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1125.2 1286 51.2
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1123.6 1166 55.1
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 0.0e+00 1121.3 1305 51.5
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1112.8 1282 51.6
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1109.0 1212 53.4
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 0.0e+00 1099.7 1356 49.6
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1097.4 1299 50.2
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1097.4 1263 52.3
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1097.0 1311 50.0
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 0.0e+00 1094.7 1197 53.2
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1091.3 1274 51.0
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1084.7 1129 54.4
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1077.4 1293 50.2
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 0.0e+00 1076.6 1326 49.5
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 8.6e-312 1073.5 1278 50.7
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.7e-311 1073.2 1144 53.8
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.7e-311 1072.8 1278 50.2
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 6.0e-311 1071.2 1274 50.7
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 1.0e-310 1070.5 1272 50.0
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 8.5e-310 1067.4 1305 49.5
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 9.4e-309 1063.9 1296 50.3
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 1.6e-308 1063.1 1136 53.3
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 2.7e-308 1062.4 1296 50.2
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 1.8e-307 1059.7 1277 50.7
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 4.0e-307 1058.5 1281 48.7
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 2.6e-306 1055.8 1122 54.2
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 3.3e-306 1055.4 1282 49.5
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 4.4e-306 1055.0 1326 48.4
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.2e-305 1052.7 1295 50.0
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.2e-305 1050.8 1289 49.8
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 2.7e-303 1045.8 1139 52.4
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 1.0e-302 1043.9 1467 45.9
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 5.0e-302 1041.6 1187 51.1
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 5.5e-301 1038.1 1270 49.1
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.4e-299 1033.5 1291 48.3
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 1.8e-299 1033.1 1274 49.3
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 5.2e-299 1031.6 1176 51.7
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 4.8e-297 1025.0 1142 52.8
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.6e-295 1020.0 966 57.7
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 1.9e-293 1013.1 1260 48.3
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 3.6e-292 1008.8 1346 46.1
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 1.8e-291 1006.5 1315 47.2
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 5.2e-291 1005.0 973 57.1
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 5.2e-291 1005.0 1289 48.2
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 4.9e-289 998.4 1268 47.3
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 1.6e-287 993.4 1358 46.6
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 1.6e-287 993.4 1281 47.5
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 5.9e-287 991.5 992 56.0
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 2.3e-286 989.6 1267 48.0
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 5.0e-286 988.4 1267 47.8
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 6.6e-286 988.0 1303 48.6
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 6.1e-284 981.5 1271 46.7
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.5e-282 974.5 1212 49.6
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 1.7e-281 973.4 1027 54.7
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 1.6e-279 966.8 1131 50.8
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.7e-278 963.4 1142 51.8
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 1.1e-277 960.7 1274 46.2
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 1.6e-276 956.8 1164 49.1
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 3.1e-275 952.6 1270 46.3
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.9e-273 946.0 1322 45.9
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 4.9e-273 945.3 1274 45.7
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 4.9e-273 945.3 1286 46.9
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 7.8e-271 937.9 1277 46.3
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.5e-269 932.9 1235 47.8
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 5.6e-269 931.8 1185 49.4
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 7.3e-269 931.4 1277 46.1
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 6.2e-268 928.3 1280 46.2
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 6.2e-268 928.3 1280 46.2
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.8e-267 926.8 1278 46.1
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 8.3e-265 917.9 1271 45.9
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 3.5e-263 912.5 1274 45.6
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 2.8e-252 876.3 959 51.4
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.1e-251 874.4 1183 46.9
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.3e-241 840.9 1463 40.3
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 9.3e-240 834.7 1196 44.9
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 6.0e-239 832.0 1284 41.7
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 8.7e-238 828.2 1314 42.6
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.1e-235 821.2 1159 45.0
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.1e-235 821.2 973 50.6
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 3.1e-235 819.7 1182 43.2
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 4.9e-233 812.4 1312 41.6
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 6.2e-228 795.4 1288 42.1
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 4.6e-223 779.2 550 70.2
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 6.5e-217 758.8 1260 40.2
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.6e-207 727.6 523 69.2
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.7e-204 717.6 1279 39.4
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.7e-199 700.3 511 67.5
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 3.2e-192 676.8 935 45.2
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 3.1e-166 590.5 1178 35.8
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 4.0e-166 590.1 1005 37.6
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 2.3e-150 537.7 1190 32.9
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 1.4e-142 511.9 684 45.2
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 6.2e-111 406.8 668 43.0
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.2e-101 375.9 984 29.6
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.8e-81 308.9 244 66.8
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 4.7e-58 231.1 173 66.5
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 8.6e-52 210.3 243 49.0
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 8.6e-52 210.3 295 46.8
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 7.5e-48 197.2 159 64.8
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 1.7e-44 186.0 139 71.9
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 7.3e-43 180.6 612 27.0
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.2e-31 142.5 104 65.4
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.7e-28 132.9 102 67.6
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 3.0e-28 132.1 234 35.5
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 8.1e-26 124.0 107 59.8
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 3.1e-25 122.1 121 51.2
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.8e-23 115.2 124 54.8
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 1.4e-22 113.2 80 62.5
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 7.8e-21 107.5 152 45.4
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.0e-20 107.1 120 54.2
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.6e-20 104.4 125 52.8
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.2e-16 93.6 116 44.8
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.5e-16 93.2 81 59.3
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 7.4e-11 74.3 135 37.0
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 1.3e-10 73.6 104 41.3
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 9.0e-09 67.4 64 54.7
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 9.0e-09 67.4 83 41.0
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 7.6e-08 64.3 74 52.7
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 9.9e-08 63.9 55 56.4
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 3.8e-07 62.0 44 65.9
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 1.9e-06 59.7 63 49.2
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 5.5e-06 58.2 46 56.5


User provided reference genes

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