Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 0.0e+00 1948.3 988 100.0
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 0.0e+00 1191.0 967 64.7
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 0.0e+00 1157.5 965 62.1
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 0.0e+00 1154.4 965 61.9
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 4.1e-291 1005.0 974 56.6
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 1.1e-267 927.2 926 55.3
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 3.4e-237 825.9 1014 48.9
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 1.7e-220 770.4 988 47.8
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 1.9e-211 740.3 1010 45.3
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.2e-204 716.8 997 44.8
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.4e-203 714.1 982 46.1
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 3.3e-200 703.0 979 45.7
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 2.4e-190 670.2 982 43.6
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 2.0e-189 667.2 982 43.3
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 4.5e-189 666.0 1022 42.9
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 3.3e-184 649.8 988 43.9
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 4.8e-183 646.0 1031 41.2
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 1.3e-180 637.9 1019 41.6
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 8.5e-180 635.2 1032 42.5
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 1.6e-178 630.9 1006 41.8
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 5.1e-177 625.9 999 41.8
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 6.7e-177 625.5 1027 41.4
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 7.7e-173 612.1 1024 41.6
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 3.2e-171 606.7 993 40.3
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 1.2e-170 604.7 1021 40.5
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 1.8e-169 600.9 1019 41.2
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 3.9e-169 599.7 1022 41.1
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 6.7e-169 599.0 964 41.6
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 9.7e-168 595.1 999 41.5
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 1.8e-166 590.9 1023 40.4
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 1.2e-165 588.2 1007 39.1
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 2.6e-165 587.0 910 42.0
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 2.6e-165 587.0 1019 40.4
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 3.8e-164 583.2 1009 40.3
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 5.7e-160 569.3 1083 39.2
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 4.8e-159 566.2 1019 39.7
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.1e-158 565.1 1007 40.2
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 7.0e-158 562.4 1002 39.6
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 5.0e-156 556.2 1019 39.1
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 1.9e-155 554.3 1010 39.3
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 4.2e-155 553.1 1006 37.6
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.6e-154 551.2 1011 37.6
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 4.7e-154 549.7 1037 39.2
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.8e-153 545.8 1017 39.0
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 8.8e-153 545.4 1021 38.7
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.4e-152 543.5 1024 38.5
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 3.4e-152 543.5 1006 39.3
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 5.7e-152 542.7 1025 39.5
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.1e-150 537.0 1014 38.4
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 3.1e-150 537.0 1014 37.8
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 1.1e-147 528.5 1005 37.6
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 2.1e-146 524.2 1017 36.5
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 4.7e-146 523.1 1035 38.2
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 2.4e-142 510.8 1010 37.4
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.6e-141 508.1 1011 38.2
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 1.7e-140 504.6 1026 36.8
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.5e-139 501.5 784 42.3
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 1.9e-139 501.1 1057 36.0
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 2.8e-138 497.3 1060 35.4
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 2.3e-137 494.2 1017 36.2
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 2.6e-136 490.7 908 39.8
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.4e-136 490.0 1001 37.7
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 3.7e-135 486.9 1039 37.2
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 2.7e-133 480.7 1029 36.3
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 7.8e-133 479.2 910 38.2
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 1.1e-131 475.3 1012 36.0
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 1.0e-129 468.8 989 37.3
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 7.5e-128 462.6 1025 36.4
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 3.7e-127 460.3 1007 35.3
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 3.7e-127 460.3 1010 35.2
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.4e-126 457.6 784 39.8
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 9.2e-126 455.7 1019 35.4
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 2.3e-124 451.1 1013 35.3
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 8.6e-124 449.1 1014 33.5
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 1.6e-122 444.9 1016 34.8
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 2.8e-122 444.1 1030 35.0
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 2.3e-121 441.0 878 37.8
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 1.2e-120 438.7 1021 34.0
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 3.4e-120 437.2 1028 34.2
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 1.4e-118 431.8 1023 34.5
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 2.4e-118 431.0 1016 34.5
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 4.1e-118 430.3 1021 34.2
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 3.5e-117 427.2 1018 34.5
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 6.0e-117 426.4 1023 34.4
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 1.7e-116 424.9 997 34.9
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 2.5e-115 421.0 996 34.4
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 2.8e-114 417.5 1014 34.6
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 1.1e-113 415.6 1023 34.9
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 5.2e-113 413.3 1018 34.3
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 5.8e-112 409.8 1023 33.0
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 7.6e-112 409.5 583 45.5
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.7e-111 408.3 826 36.4
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 2.4e-110 404.4 1023 33.1
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 2.4e-110 404.4 1023 33.1
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 2.8e-98 364.4 447 47.4
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 2.8e-98 364.4 892 33.7
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 9.3e-94 349.4 480 43.3
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.8e-92 345.1 589 38.9
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 6.7e-92 343.2 456 45.0
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 6.7e-92 343.2 976 33.1
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.6e-90 338.6 1033 31.1
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 6.2e-90 336.7 1002 31.8
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 2.6e-88 331.3 663 38.0
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 5.1e-84 317.0 901 31.7
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.7e-82 310.8 378 49.5
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 1.4e-78 298.9 871 30.8
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 3.2e-78 297.7 1030 28.9
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 1.3e-63 249.2 1091 26.2
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 2.9e-63 248.1 250 59.2
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 1.2e-61 242.7 373 42.1
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 5.1e-60 237.3 305 47.9
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.3e-58 232.6 928 28.6
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.1e-54 219.5 363 41.6
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.4e-54 219.2 388 42.3
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.4e-52 212.6 250 54.8
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 5.2e-52 210.7 612 30.1
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 2.0e-51 208.8 983 26.6
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 2.9e-39 168.3 316 37.3
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 9.1e-33 146.7 139 59.7
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.2e-32 146.4 355 32.4
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 5.5e-30 137.5 371 32.9
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 2.9e-23 115.2 1011 22.4
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 4.1e-17 94.7 164 39.6
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 2.2e-10 72.4 91 49.5
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 3.2e-09 68.6 184 33.7
AagrBONN_evm.TU.Sc2ySwM_117.1094 Anthoceros agrestis HOM05D005720 ORTHO05D006984 4.6e-08 64.7 120 32.5
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 2.5e-06 58.9 294 25.5
Actinidia34180 Actinidia chinensis HOM05D005720 ORTHO05D006984 3.3e-06 58.5 83 44.6
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 5.6e-06 57.8 176 31.8
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 7.3e-06 57.4 84 41.7


User provided reference genes

Program Settings