Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 2.1e-220 768.8 418 100.0
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 9.2e-168 594.0 402 76.4
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.7e-166 589.7 398 77.1
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.9e-166 589.0 398 75.1
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 8.6e-166 587.4 401 75.1
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.2e-164 583.6 401 74.1
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 2.1e-164 582.8 402 75.4
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 6.1e-164 581.3 448 68.3
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 8.0e-164 580.9 402 73.9
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 1.8e-163 579.7 402 74.4
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.8e-163 579.7 402 73.1
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 5.2e-163 578.2 400 73.5
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.2e-162 577.0 402 73.1
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.2e-162 577.0 398 74.1
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.2e-162 577.0 398 74.1
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 3.4e-162 575.5 401 75.6
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 7.5e-162 574.3 398 74.6
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 2.2e-161 572.8 398 75.1
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 2.9e-161 572.4 403 71.5
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 4.9e-161 571.6 398 75.4
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.4e-161 571.2 398 72.9
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 4.1e-160 568.5 402 74.1
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 5.4e-160 568.2 401 72.6
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.6e-159 566.6 401 72.3
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 4.6e-159 565.1 399 74.2
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 5.9e-159 564.7 400 73.5
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 7.8e-159 564.3 413 70.0
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.7e-158 563.1 401 71.8
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 2.3e-158 562.8 400 71.2
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 2.3e-158 562.8 400 71.2
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 2.3e-158 562.8 404 70.3
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.9e-157 559.7 404 69.8
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 3.3e-157 558.9 401 74.6
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 4.3e-157 558.5 403 70.7
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 5.6e-157 558.1 399 72.4
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.1e-156 556.2 404 69.6
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 3.6e-156 555.4 400 72.5
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 6.2e-156 554.7 399 71.4
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.4e-155 553.5 400 73.2
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 4.0e-155 552.0 451 66.7
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 5.2e-155 551.6 401 70.1
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 6.8e-155 551.2 441 68.5
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.2e-154 550.4 404 70.3
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.2e-154 550.4 405 69.9
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.6e-154 549.3 407 69.3
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 4.4e-154 548.5 407 69.0
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 4.4e-154 548.5 404 71.8
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.8e-154 548.1 404 71.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 7.5e-154 547.7 407 69.3
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 9.8e-154 547.4 403 71.2
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.3e-153 547.0 403 70.7
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.3e-153 547.0 403 70.7
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.7e-153 546.6 404 71.5
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.7e-153 546.6 407 69.0
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.9e-153 545.8 401 72.1
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 3.7e-153 545.4 400 69.8
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.1e-152 543.9 400 70.5
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.9e-152 543.1 401 73.1
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 2.4e-152 542.7 402 72.4
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 5.4e-152 541.6 409 72.9
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 9.2e-152 540.8 403 70.2
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.6e-151 540.0 407 68.1
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.0e-151 539.7 407 68.3
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 3.5e-151 538.9 402 72.1
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 7.8e-151 537.7 402 69.7
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.3e-150 537.0 439 65.4
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.3e-150 537.0 398 69.8
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 2.3e-150 536.2 402 69.2
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.0e-150 535.8 398 71.1
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.0e-150 535.8 398 71.1
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 3.0e-150 535.8 399 69.4
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 3.9e-150 535.4 399 68.7
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 5.0e-150 535.0 402 71.6
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 6.6e-150 534.6 403 67.7
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 7.3e-149 531.2 403 68.0
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.2e-148 530.4 404 68.8
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 4.7e-148 528.5 400 73.0
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 4.7e-148 528.5 400 70.5
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 4.7e-148 528.5 389 69.7
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.8e-147 526.6 402 67.2
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.3e-147 526.2 404 68.1
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 4.0e-147 525.4 401 67.8
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 4.4e-146 521.9 400 67.0
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.7e-145 518.8 405 66.4
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 4.9e-145 518.5 403 69.0
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 6.4e-145 518.1 398 66.1
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.4e-144 516.2 428 65.0
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 3.2e-144 515.8 407 67.1
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.6e-143 513.5 401 67.8
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 2.1e-143 513.1 400 66.8
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 1.7e-142 510.0 401 68.6
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 2.3e-142 509.6 406 66.0
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 3.0e-142 509.2 401 67.6
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.1e-142 508.4 395 65.8
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 5.1e-142 508.4 402 66.2
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.1e-141 507.3 401 66.6
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.1e-141 507.3 401 66.8
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.5e-141 506.9 403 67.7
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.5e-141 506.9 401 67.1
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 3.3e-141 505.8 403 66.3
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 4.3e-141 505.4 403 66.3
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.2e-140 501.5 409 66.3
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.2e-140 501.5 398 67.8
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 3.1e-139 499.2 404 64.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 3.1e-139 499.2 401 66.3
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 3.1e-139 499.2 407 62.4
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.2e-138 497.3 402 65.9
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 4.4e-138 495.4 407 64.1
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 3.2e-136 489.2 398 65.6
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.6e-135 486.9 401 63.1
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.0e-134 484.2 395 61.8
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.3e-134 483.8 401 63.6
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 7.3e-133 478.0 405 64.7
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.3e-129 467.2 419 62.5
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.9e-128 463.4 398 60.1
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 2.7e-127 459.5 403 61.8
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 3.5e-127 459.1 401 57.6
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 2.4e-123 446.4 373 63.5
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.8e-115 420.2 332 67.5
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.0e-115 417.9 514 49.0
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.8e-113 412.5 293 72.4
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 9.3e-112 407.9 375 58.7
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.8e-110 403.7 435 53.8
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.9e-110 402.5 337 62.3
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.7e-108 396.0 440 52.3
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 9.3e-104 381.3 398 50.5
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 4.6e-103 379.0 400 52.8
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 4.6e-103 379.0 400 52.8
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 6.0e-103 378.6 404 56.9
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 6.7e-94 348.6 397 50.4
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.4e-90 336.3 400 53.0
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 2.9e-89 333.2 401 50.6
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 2.4e-75 287.0 403 48.1
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 5.0e-65 252.7 202 65.8
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 4.2e-64 249.6 432 37.3
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 8.0e-63 245.4 363 41.6
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 5.2e-54 216.1 305 41.6
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 6.8e-54 215.7 273 52.0
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.0e-43 179.1 148 64.9
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.6e-37 160.6 137 70.8
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 3.2e-35 153.7 102 76.5
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 8.6e-25 119.0 93 67.7
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 9.5e-24 115.5 105 55.2
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 9.9e-21 105.5 123 48.8
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 1.3e-20 105.1 69 76.8
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.3e-20 105.1 82 68.3
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 4.1e-19 100.1 418 26.6
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.5e-18 97.1 71 64.8
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 7.3e-16 89.4 60 68.3
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.2e-13 82.0 430 23.7
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.4e-13 80.1 63 60.3
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 6.4e-12 76.3 453 26.3
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.1e-11 75.5 394 23.6
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.2e-11 73.6 72 61.1
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 5.6e-08 63.2 63 57.1
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.6e-07 61.6 39 76.9
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 3.1e-06 57.4 36 77.8
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 9.0e-06 55.8 86 40.7


User provided reference genes

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