Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 8.9e-49 196.8 114 100.0
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.4e-32 141.7 118 78.8
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.0e-28 130.2 114 71.1
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.1e-28 127.9 114 71.9
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 2.0e-24 115.9 116 68.1
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 1.4e-22 109.8 102 66.7
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.9e-22 109.4 109 64.2
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 2.1e-21 105.9 107 57.9
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 4.6e-21 104.8 103 61.2
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 7.8e-21 104.0 86 68.6
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.0e-20 103.6 112 56.2
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 1.3e-20 103.2 108 61.1
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.3e-20 103.2 92 64.1
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.3e-20 103.2 103 60.2
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.3e-20 103.2 117 59.0
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 1.7e-20 102.8 82 73.2
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 1.7e-20 102.8 82 73.2
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 8.7e-20 100.5 114 55.3
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.5e-19 99.8 110 55.5
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.5e-19 99.8 107 61.7
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.9e-19 99.4 95 64.2
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 1.9e-19 99.4 107 57.9
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 9.6e-19 97.1 102 58.8
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 9.6e-19 97.1 111 57.7
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.6e-18 96.3 110 55.5
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.6e-18 96.3 88 63.6
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.6e-18 96.3 88 63.6
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.6e-18 96.3 109 60.6
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.6e-18 96.3 86 67.4
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 3.6e-18 95.1 99 59.6
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.8e-18 94.7 85 63.5
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 6.2e-18 94.4 106 55.7
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 8.1e-18 94.0 98 61.2
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.1e-17 93.6 112 56.2
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.4e-17 93.2 80 67.5
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 1.4e-17 93.2 110 55.5
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.8e-17 92.8 88 61.4
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 3.1e-17 92.0 102 55.9
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 4.0e-17 91.7 94 63.8
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 4.0e-17 91.7 101 59.4
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.0e-17 91.7 110 55.5
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 5.3e-17 91.3 90 63.3
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 6.9e-17 90.9 83 62.7
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 6.9e-17 90.9 92 64.1
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 9.0e-17 90.5 110 54.5
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 9.0e-17 90.5 103 57.3
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 2.0e-16 89.4 91 61.5
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.0e-16 89.4 110 54.5
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 2.6e-16 89.0 98 56.1
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.6e-16 89.0 110 54.5
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 4.5e-16 88.2 108 53.7
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 4.5e-16 88.2 116 52.6
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 4.5e-16 88.2 109 55.0
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 7.6e-16 87.4 94 61.7
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 7.6e-16 87.4 86 60.5
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 7.6e-16 87.4 86 60.5
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.3e-15 86.7 85 63.5
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.3e-15 86.7 86 58.1
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 1.3e-15 86.7 90 57.8
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.3e-15 86.7 105 56.2
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.7e-15 86.3 86 61.6
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.7e-15 86.3 97 55.7
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.7e-15 86.3 82 62.2
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.7e-15 86.3 111 55.0
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 1.7e-15 86.3 92 56.5
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 2.2e-15 85.9 91 58.2
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 2.9e-15 85.5 83 60.2
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 3.8e-15 85.1 99 57.6
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.8e-15 85.1 111 55.0
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.9e-15 84.7 77 64.9
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 6.4e-15 84.3 63 71.4
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 6.4e-15 84.3 83 60.2
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 8.4e-15 84.0 113 54.0
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.1e-14 83.6 111 54.1
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.1e-14 83.6 86 55.8
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.4e-14 83.2 80 63.8
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 1.4e-14 83.2 121 50.4
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 1.4e-14 83.2 82 59.8
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 1.9e-14 82.8 83 57.8
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.9e-14 82.8 89 58.4
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 3.2e-14 82.0 73 64.4
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 3.2e-14 82.0 87 58.6
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 3.2e-14 82.0 82 59.8
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 5.4e-14 81.3 80 58.8
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 5.4e-14 81.3 77 66.2
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 9.3e-14 80.5 87 55.2
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 9.3e-14 80.5 83 61.4
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.2e-13 80.1 72 61.1
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.6e-13 79.7 89 55.1
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 2.1e-13 79.3 82 59.8
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 2.7e-13 79.0 90 54.4
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.5e-13 78.6 67 62.7
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 4.6e-13 78.2 101 55.4
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 4.6e-13 78.2 99 54.5
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 6.0e-13 77.8 87 50.6
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 6.0e-13 77.8 102 52.9
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 6.0e-13 77.8 89 58.4
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 6.0e-13 77.8 94 52.1
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 7.9e-13 77.4 82 56.1
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 1.0e-12 77.0 110 50.0
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 1.3e-12 76.6 84 56.0
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.3e-12 76.6 100 53.0
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.8e-12 76.3 113 52.2
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 2.3e-12 75.9 76 57.9
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 2.3e-12 75.9 82 54.9
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 2.3e-12 75.9 83 56.6
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.0e-12 75.5 81 61.7
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 3.9e-12 75.1 105 53.3
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 3.9e-12 75.1 107 51.4
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 3.9e-12 75.1 71 63.4
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 5.1e-12 74.7 107 50.5
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 6.7e-12 74.3 93 51.6
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 8.7e-12 73.9 95 50.5
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 1.9e-11 72.8 62 61.3
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.5e-11 72.4 98 52.0
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.3e-11 72.0 98 52.0
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 4.3e-11 71.6 101 49.5
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 5.6e-11 71.2 89 52.8
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 5.6e-11 71.2 89 52.8
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 9.6e-11 70.5 100 50.0
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 9.6e-11 70.5 100 48.0
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 9.6e-11 70.5 98 51.0
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 9.6e-11 70.5 115 47.0
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 1.6e-10 69.7 91 53.8
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 2.1e-10 69.3 84 51.2
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 2.1e-10 69.3 88 54.5
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 4.8e-10 68.2 75 56.0
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 4.8e-10 68.2 75 56.0
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 4.8e-10 68.2 90 54.4
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 6.2e-10 67.8 75 54.7
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 6.2e-10 67.8 75 56.0
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 6.2e-10 67.8 55 63.6
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 6.2e-10 67.8 94 51.1
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 8.1e-10 67.4 75 53.3
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.1e-09 67.0 75 54.7
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.1e-09 67.0 86 50.0
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.4e-09 66.6 92 51.1
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.4e-09 66.6 75 53.3
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 4.0e-09 65.1 75 53.3
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 6.9e-09 64.3 86 50.0
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 9.0e-09 63.9 75 50.7
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 9.0e-09 63.9 75 53.3
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 9.0e-09 63.9 75 49.3
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 9.0e-09 63.9 89 48.3
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 9.0e-09 63.9 75 49.3
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 1.2e-08 63.5 89 48.3
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 1.2e-08 63.5 75 49.3
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 1.2e-08 63.5 75 49.3
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 1.2e-08 63.5 89 48.3
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 1.2e-08 63.5 75 49.3
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 1.2e-08 63.5 89 48.3
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 1.2e-08 63.5 75 52.0
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.2e-08 63.5 92 47.8
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.2e-08 63.5 75 49.3
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.5e-08 63.2 75 50.7
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 1.5e-08 63.2 86 50.0
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 2.0e-08 62.8 109 45.0
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.0e-08 62.8 86 48.8
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.6e-08 62.4 75 49.3
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.6e-08 62.4 75 49.3
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 2.6e-08 62.4 80 48.8
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 3.4e-08 62.0 92 45.7
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 3.4e-08 62.0 75 50.7
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 3.4e-08 62.0 80 48.8
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 3.4e-08 62.0 80 48.8
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 3.4e-08 62.0 75 48.0
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 3.4e-08 62.0 75 49.3
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 4.5e-08 61.6 75 48.0
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 1.3e-07 60.1 54 57.4
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 1.7e-07 59.7 93 46.2
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 1.7e-07 59.7 79 53.2
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.7e-07 59.7 111 44.1
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-07 59.3 80 46.2
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 2.2e-07 59.3 58 58.6
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 2.2e-07 59.3 55 69.1
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 2.2e-07 59.3 112 44.6
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 4.9e-07 58.2 104 45.2
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 6.4e-07 57.8 107 43.9
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 7.1e-06 54.3 111 39.6
MBI12_g23072_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 7.1e-06 54.3 87 47.1
MBI12_g33141_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 7.1e-06 54.3 87 47.1
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 9.3e-06 53.9 60 53.3


User provided reference genes

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