Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 1.3e-107 394.4 203 100.0
Migut.F00108 Erythranthe guttata HOM05D007456 ORTHO05D009411 3.5e-36 157.1 189 49.7
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 3.5e-36 157.1 152 57.2
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 1.8e-35 154.8 209 46.4
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 1.1e-34 152.1 209 45.5
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 3.3e-34 150.6 209 45.5
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.5e-31 141.7 129 55.8
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 1.9e-29 134.8 197 44.2
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 1.6e-28 131.7 158 44.9
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 2.7e-28 131.0 131 49.6
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 4.6e-28 130.2 131 49.6
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 6.7e-27 126.3 129 51.2
SalBow4G3145 Salvia bowleyana HOM05D007456 ORTHO05D009411 9.7e-26 122.5 125 56.0
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 2.8e-25 120.9 119 50.4
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 4.8e-25 120.2 200 37.5
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 1.1e-24 119.0 158 45.6
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 9.0e-24 115.9 114 50.9
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 2.0e-23 114.8 111 53.2
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 2.2e-22 111.3 112 50.0
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 3.8e-22 110.5 114 48.2
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 8.5e-22 109.4 103 55.3
FAN19G0065 Fragaria x ananassa HOM05D007456 ORTHO05D009411 8.5e-22 109.4 105 56.2
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 8.5e-22 109.4 111 49.5
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 5.5e-21 106.7 108 51.9
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 6.1e-20 103.2 139 43.2
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 7.9e-20 102.8 139 43.2
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 2.3e-19 101.3 134 43.3
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 2.8e-17 94.4 96 55.2
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 1.4e-16 92.0 110 47.3
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 1.4e-16 92.0 150 40.0
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 3.1e-16 90.9 178 36.5
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 6.9e-16 89.7 178 36.5
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 6.9e-16 89.7 129 40.3
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 1.2e-15 89.0 74 58.1
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 3.4e-15 87.4 176 36.4
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 7.7e-15 86.3 128 41.4
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 2.2e-14 84.7 82 56.1
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 2.9e-14 84.3 133 39.8
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 5.0e-14 83.6 69 59.4
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 8.5e-14 82.8 127 39.4
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 8.5e-14 82.8 127 39.4
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 2.5e-13 81.3 158 37.3
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 2.5e-13 81.3 155 37.4
Atru.BG.267.p Acer truncatum HOM05D007456 ORTHO05D009411 5.5e-13 80.1 78 56.4
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 5.5e-13 80.1 124 42.7
BcaC02g09522 Brassica carinata HOM05D007456 ORTHO05D009411 7.2e-13 79.7 107 43.0
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 7.9e-12 76.3 100 45.0
Oeu026572.1 Olea europaea HOM05D007456 ORTHO05D009411 7.9e-12 76.3 105 43.8
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 1.4e-11 75.5 122 36.9
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 3.0e-11 74.3 65 53.8
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 3.9e-11 73.9 64 59.4
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 3.9e-11 73.9 64 56.2
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 5.1e-11 73.6 63 55.6
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 5.1e-11 73.6 79 53.2
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 6.7e-11 73.2 135 35.6
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 6.7e-11 73.2 143 36.4
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 8.8e-11 72.8 64 56.2
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 2.0e-10 71.6 66 57.6
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 2.0e-10 71.6 120 36.7
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 4.4e-10 70.5 60 55.0
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 4.4e-10 70.5 60 55.0
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 1.3e-09 68.9 81 48.1
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 1.3e-09 68.9 58 56.9
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 1.1e-08 65.9 85 38.8
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 3.1e-08 64.3 142 31.7
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 4.1e-08 63.9 54 57.4
A03p13560 Brassica napus HOM05D000001 ORTHO05D009857 5.3e-08 63.5 142 31.7
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 7.0e-08 63.2 137 37.2
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 7.0e-08 63.2 64 46.9
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 9.1e-08 62.8 54 55.6
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 9.1e-08 62.8 61 54.1
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 9.1e-08 62.8 61 54.1
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 2.0e-07 61.6 82 39.0
DCAR_010527 Daucus carota HOM05D006163 ORTHO05D007625 7.7e-07 59.7 66 43.9
PGR119G1317 Punica granatum HOM05D000891 ORTHO05D000761 7.7e-07 59.7 121 27.3
SalBow1G4634 Salvia bowleyana HOM05D042251 ORTHO05D002854 1.0e-06 59.3 139 26.6
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.3e-06 58.9 101 37.6
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 1.7e-06 58.5 54 55.6
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 2.9e-06 57.8 127 29.1
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 2.9e-06 57.8 110 34.5
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 3.8e-06 57.4 101 36.6
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 3.8e-06 57.4 126 35.7
Carub.0008s1663 Capsella rubella HOM05D000001 ORTHO05D009857 6.5e-06 56.6 121 30.6
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 6.5e-06 56.6 69 40.6
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 6.5e-06 56.6 72 38.9
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 8.5e-06 56.2 114 32.5
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 8.5e-06 56.2 69 42.0
Hund09765 Selenicereus undatus HOM05D007456 ORTHO05D009411 8.5e-06 56.2 119 28.6


User provided reference genes

Program Settings