Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 2.4e-69 265.4 132 100.0
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 3.3e-39 165.2 132 65.9
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 1.2e-36 156.8 133 63.2
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 1.3e-35 153.3 133 60.9
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 2.9e-35 152.1 132 60.6
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 4.6e-33 144.8 138 59.4
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 1.8e-32 142.9 133 57.9
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 1.5e-31 139.8 133 56.4
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 3.1e-29 132.1 137 54.0
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 7.7e-28 127.5 146 54.1
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 1.3e-27 126.7 142 55.6
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.6e-25 118.6 133 51.1
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 5.1e-24 114.8 135 50.4
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 5.1e-24 114.8 149 49.7
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.5e-23 113.2 149 49.0
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 5.7e-23 111.3 135 51.1
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 8.2e-22 107.5 133 49.6
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 1.1e-21 107.1 131 49.6
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.4e-21 106.7 132 49.2
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.4e-21 106.7 149 47.0
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 2.4e-21 105.9 136 49.3
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 4.1e-21 105.1 147 44.2
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 9.1e-21 104.0 132 45.5
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 1.5e-20 103.2 149 46.3
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 3.4e-20 102.1 138 49.3
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 3.4e-20 102.1 136 44.9
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 4.5e-20 101.7 134 45.5
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 2.2e-19 99.4 132 43.9
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.8e-19 98.6 149 45.0
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 6.5e-19 97.8 132 43.2
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 6.5e-19 97.8 132 43.2
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 6.5e-19 97.8 132 44.7
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 6.5e-19 97.8 132 44.7
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.1e-18 97.1 133 45.9
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 1.4e-18 96.7 131 42.7
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 2.5e-18 95.9 134 43.3
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 3.2e-18 95.5 132 42.4
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 4.2e-18 95.1 139 45.3
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 5.5e-18 94.7 149 45.0
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 7.2e-18 94.4 136 47.1
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 7.2e-18 94.4 135 46.7
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 2.7e-17 92.4 134 43.3
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.7e-17 92.4 134 42.5
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.7e-17 92.4 134 42.5
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 3.6e-17 92.0 139 41.7
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 4.7e-17 91.7 132 43.9
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 6.1e-17 91.3 137 43.8
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 8.0e-17 90.9 137 43.8
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.0e-16 90.5 133 42.1
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.0e-16 90.5 142 44.4
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 1.8e-16 89.7 135 45.2
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 2.3e-16 89.4 137 43.1
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 3.0e-16 89.0 128 43.0
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 3.9e-16 88.6 137 46.0
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.2e-16 88.2 137 44.5
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 6.7e-16 87.8 137 43.1
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 6.7e-16 87.8 135 43.0
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.1e-15 87.0 140 42.1
unitig_578.g15702 Utricularia gibba HOM05D004206 ORTHO05D003325 3.3e-15 85.5 89 52.8
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 4.4e-15 85.1 137 40.9
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 7.4e-15 84.3 137 38.7
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 1.3e-14 83.6 128 43.0
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.7e-14 83.2 141 44.7
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 2.8e-14 82.4 131 43.5
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 2.8e-14 82.4 135 41.5
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 6.3e-14 81.3 138 41.3
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 6.3e-14 81.3 142 40.1
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 8.2e-14 80.9 134 41.8
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 8.2e-14 80.9 134 42.5
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 1.1e-13 80.5 131 40.5
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.1e-13 80.5 137 44.5
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 1.4e-13 80.1 137 41.6
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 1.8e-13 79.7 134 43.3
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 1.8e-13 79.7 136 42.6
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 1.8e-13 79.7 146 39.0
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 3.1e-13 79.0 137 43.8
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 3.1e-13 79.0 85 55.3
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 3.1e-13 79.0 136 40.4
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 5.3e-13 78.2 143 39.9
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 9.1e-13 77.4 130 39.2
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 1.2e-12 77.0 133 39.8
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 1.2e-12 77.0 76 56.6
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 1.6e-12 76.6 134 39.6
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 1.6e-12 76.6 133 42.1
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 2.6e-12 75.9 134 40.3
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 2.6e-12 75.9 136 42.6
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 3.5e-12 75.5 141 39.0
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 3.5e-12 75.5 141 39.0
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 5.9e-12 74.7 136 38.2
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 7.7e-12 74.3 134 36.6
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 1.0e-11 73.9 135 41.5
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 1.3e-11 73.6 54 63.0
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 1.7e-11 73.2 141 40.4
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 1.7e-11 73.2 133 42.9
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 2.2e-11 72.8 132 38.6
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.2e-11 72.8 134 35.8
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 2.9e-11 72.4 137 33.6
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.9e-11 72.4 135 37.8
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 3.8e-11 72.0 138 37.7
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 3.8e-11 72.0 133 36.8
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 1.5e-10 70.1 130 39.2
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.9e-10 69.7 133 38.3
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 3.2e-10 68.9 133 39.8
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 4.2e-10 68.6 134 39.6
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 5.5e-10 68.2 132 38.6
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 7.2e-10 67.8 79 53.2
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 7.2e-10 67.8 151 39.7
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.6e-09 66.6 132 36.4
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 1.6e-09 66.6 139 37.4
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 1.6e-09 66.6 144 34.0
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 2.7e-09 65.9 134 36.6
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 4.7e-09 65.1 148 36.5
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 6.1e-09 64.7 122 41.0
Nn2g12918 Nelumbo nucifera HOM05D004206 ORTHO05D003325 8.0e-09 64.3 129 37.2
Hma1.2p1_1004F.1_g246870 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.0e-08 63.9 43 65.1
CSS0031426 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D000289 1.4e-08 63.5 63 55.6
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 1.4e-08 63.5 119 38.7
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 2.3e-08 62.8 163 32.5
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 4.0e-08 62.0 74 47.3
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 4.0e-08 62.0 131 34.4
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 4.0e-08 62.0 76 50.0
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 5.2e-08 61.6 149 32.9
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 1.2e-07 60.5 74 47.3
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 5.7e-07 58.2 74 45.9
vmacro03102 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 5.7e-07 58.2 76 48.7
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 7.5e-07 57.8 87 41.4
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 9.7e-07 57.4 76 47.4
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 1.3e-06 57.0 151 30.5
Os05g0113500 Oryza sativa ssp. japonica HOM05D004206 ORTHO05D003325 1.3e-06 57.0 141 33.3
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 1.7e-06 56.6 162 30.9
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 4.8e-06 55.1 74 43.2
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 4.8e-06 55.1 74 43.2
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 4.8e-06 55.1 74 43.2
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 4.8e-06 55.1 141 36.9
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 6.3e-06 54.7 136 36.0
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 8.2e-06 54.3 65 47.7
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 8.2e-06 54.3 52 50.0
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 8.2e-06 54.3 87 39.1
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 8.2e-06 54.3 35 68.6
SalBow8G2190 Salvia bowleyana HOM05D004206 ORTHO05D003325 8.2e-06 54.3 58 46.6
Zm00001eb266560 Zea mays HOM05D019293 ORTHO05D003325 8.2e-06 54.3 143 32.9


User provided reference genes

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