Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 2.0e-161 572.4 286 100.0
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 8.7e-61 238.0 315 49.8
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 4.3e-60 235.7 319 49.2
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 3.4e-49 199.5 317 47.6
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 2.1e-46 190.3 318 42.8
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.6e-44 183.3 309 43.4
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.4e-42 176.8 328 40.2
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 4.1e-42 176.0 321 42.7
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.5e-41 174.1 312 41.7
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.0e-40 171.4 320 41.6
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.0e-40 171.4 313 41.2
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.3e-40 171.0 312 41.7
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.7e-40 170.6 323 39.3
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 2.9e-40 169.9 318 40.3
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 2.9e-40 169.9 326 41.7
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 6.5e-40 168.7 320 41.6
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.1e-39 167.9 326 42.0
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 2.5e-39 166.8 281 45.6
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 2.5e-39 166.8 292 42.1
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.2e-39 166.0 292 42.1
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.6e-38 164.1 292 42.5
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 4.7e-38 162.5 352 36.6
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 4.7e-38 162.5 333 40.2
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 4.7e-38 162.5 265 44.9
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.4e-37 161.0 306 42.8
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.4e-37 161.0 306 42.8
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.3e-37 160.2 318 38.7
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 3.0e-37 159.8 286 40.6
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 3.0e-37 159.8 290 42.8
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 8.8e-37 158.3 315 38.1
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 1.1e-36 157.9 294 40.8
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.1e-36 157.9 322 37.0
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 1.5e-36 157.5 341 39.9
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.5e-36 157.5 310 38.4
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 5.7e-36 155.6 323 39.3
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 9.7e-36 154.8 324 40.1
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 3.7e-35 152.9 359 35.7
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.7e-35 152.9 305 39.7
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 3.7e-35 152.9 336 36.0
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 6.3e-35 152.1 316 40.2
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 6.3e-35 152.1 340 38.5
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.4e-34 150.2 314 38.9
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 3.1e-34 149.8 366 38.8
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 5.3e-34 149.1 323 38.4
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.0e-33 147.1 323 36.2
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 2.6e-33 146.7 337 38.0
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 3.8e-32 142.9 337 36.8
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 8.5e-32 141.7 350 34.9
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 1.1e-31 141.4 307 38.1
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.5e-31 141.0 280 38.6
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 1.5e-31 141.0 270 37.0
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 3.2e-31 139.8 338 37.6
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 4.2e-31 139.4 323 38.7
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 4.2e-31 139.4 284 38.7
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 5.5e-31 139.0 403 34.5
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 7.2e-31 138.7 270 38.1
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.2e-30 137.9 326 38.0
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.2e-30 137.9 292 39.4
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 1.6e-30 137.5 331 35.3
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 3.6e-30 136.3 329 35.9
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.4e-29 134.4 299 37.5
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.8e-29 134.0 324 37.3
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.3e-29 133.7 330 36.7
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.0e-29 132.9 323 35.6
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 5.2e-29 132.5 295 38.0
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 5.2e-29 132.5 266 39.8
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 8.8e-29 131.7 328 36.9
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.2e-28 131.3 287 38.3
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.2e-28 131.3 277 40.4
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.4e-28 129.4 328 36.6
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 7.5e-28 128.6 257 38.1
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 9.7e-28 128.3 356 32.9
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.2e-27 127.1 328 36.3
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.4e-26 124.4 309 35.9
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 2.4e-26 123.6 312 35.9
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 2.0e-25 120.6 296 35.8
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.7e-25 120.2 295 35.3
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 5.9e-25 119.0 311 36.3
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 1.3e-24 117.9 294 36.4
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 1.3e-24 117.9 334 33.2
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.7e-24 117.5 301 37.2
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.7e-24 117.5 294 35.4
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 3.8e-24 116.3 208 40.9
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 3.8e-24 116.3 208 40.9
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-23 114.8 212 41.5
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-23 114.8 212 41.5
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.9e-23 114.0 281 36.7
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.2e-23 113.2 313 34.2
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.2e-23 112.8 285 38.2
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 4.2e-23 112.8 215 40.0
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 4.2e-23 112.8 215 40.0
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 5.5e-23 112.5 299 37.5
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 5.5e-23 112.5 212 41.0
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 9.4e-23 111.7 295 34.6
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 4.7e-22 109.4 294 35.0
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 4.7e-22 109.4 228 38.2
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 8.0e-22 108.6 276 33.7
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.8e-21 107.5 292 35.3
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 3.0e-21 106.7 293 34.5
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 5.2e-21 105.9 272 37.5
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.5e-20 104.4 298 33.9
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 2.0e-20 104.0 287 33.4
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 2.0e-20 104.0 287 33.4
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 5.7e-20 102.4 287 34.5
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 9.8e-20 101.7 287 36.6
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.7e-19 100.9 294 35.7
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 2.8e-19 100.1 327 32.1
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.1e-18 98.2 196 41.8
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.4e-18 97.8 313 32.6
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.8e-18 97.4 131 43.5
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 9.1e-18 95.1 307 33.2
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 9.1e-18 95.1 262 33.2
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.2e-17 94.7 316 31.3
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 2.0e-17 94.0 299 34.4
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 2.0e-17 94.0 299 34.4
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.0e-17 94.0 326 31.6
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 2.0e-17 94.0 303 35.3
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.5e-17 93.2 283 32.2
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 3.5e-17 93.2 272 33.5
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 3.5e-17 93.2 255 33.3
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 5.9e-17 92.4 189 41.3
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 1.3e-16 91.3 280 34.6
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.7e-16 90.9 280 35.4
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 2.2e-16 90.5 307 33.9
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.2e-16 90.5 159 45.3
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 2.9e-16 90.1 269 32.0
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.1e-15 88.2 302 34.8
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 1.5e-15 87.8 300 33.0
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.5e-15 87.8 261 33.0
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 1.9e-15 87.4 193 39.9
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 1.9e-15 87.4 275 34.5
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 3.2e-15 86.7 178 38.8
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 7.2e-15 85.5 278 33.5
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 9.5e-15 85.1 304 32.9
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 9.5e-15 85.1 192 40.1
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.6e-14 84.3 278 34.2
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 4.7e-14 82.8 295 32.5
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 4.7e-14 82.8 292 33.6
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 8.0e-14 82.0 83 62.7
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.4e-13 81.3 256 32.4
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 1.8e-13 80.9 189 39.7
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 8.8e-13 78.6 293 30.7
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 4.4e-12 76.3 180 39.4
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 9.8e-12 75.1 289 30.4
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.7e-11 74.3 304 32.2
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.7e-11 74.3 102 50.0
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 3.7e-11 73.2 72 61.1
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 3.7e-11 73.2 119 41.2
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 3.5e-09 66.6 77 51.9
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 2.3e-08 63.9 304 29.9
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 3.8e-08 63.2 176 32.4
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 5.0e-08 62.8 312 27.9
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.3e-07 60.1 67 43.3
Nitab4.5_0006156g0060 Nicotiana tabacum HOM05D004499 ORTHO05D004928 4.7e-06 56.2 78 48.7


User provided reference genes

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