Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 3.4e-158 563.1 824 100.0
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.8e-74 285.0 825 77.7
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 3.3e-60 237.7 210 64.8
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 4.3e-52 210.7 203 52.2
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 1.1e-50 206.1 207 54.1
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 1.2e-49 202.6 205 50.7
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 1.5e-49 202.2 211 51.2
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 2.2e-48 198.4 187 52.9
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 2.9e-48 198.0 205 50.2
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 4.9e-48 197.2 205 49.8
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 8.4e-48 196.4 205 49.3
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.1e-46 191.8 206 50.5
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.5e-41 175.6 198 47.0
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 3.8e-40 171.0 198 45.5
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 6.4e-40 170.2 202 47.0
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.9e-39 168.7 147 55.8
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.2e-39 167.9 192 48.4
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 2.1e-38 165.2 205 41.0
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 1.5e-36 159.1 205 45.4
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 2.8e-35 154.8 198 42.9
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 6.2e-35 153.7 208 43.3
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 1.1e-34 152.9 171 48.5
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 1.4e-34 152.5 171 48.0
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 2.4e-34 151.8 199 42.7
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 5.3e-34 150.6 129 51.9
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 5.3e-34 150.6 178 48.3
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 3.4e-33 147.9 142 51.4
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 5.8e-33 147.1 207 43.0
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.0e-32 146.4 194 39.7
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 1.3e-32 146.0 181 47.0
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.1e-31 142.9 204 40.2
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 1.9e-31 142.1 206 45.1
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 3.2e-31 141.4 209 41.1
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 5.5e-31 140.6 207 40.6
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 1.2e-30 139.4 152 46.1
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 2.1e-30 138.7 209 40.7
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.7e-30 138.3 204 39.2
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.0e-29 136.3 159 45.9
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 1.3e-29 136.0 179 44.7
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 8.7e-29 133.3 170 40.0
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 1.1e-28 132.9 139 46.8
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 1.9e-28 132.1 171 40.9
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.9e-28 132.1 150 44.7
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.5e-28 131.7 140 43.6
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 2.5e-28 131.7 211 39.8
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.3e-28 131.3 144 47.9
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 5.7e-28 130.6 210 38.1
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 5.7e-28 130.6 140 45.7
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 1.3e-27 129.4 224 37.9
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.3e-27 129.4 194 40.2
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.3e-27 129.4 144 47.2
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.1e-27 128.6 144 47.2
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 4.8e-27 127.5 148 48.0
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 4.8e-27 127.5 184 40.2
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 6.2e-27 127.1 148 48.0
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 8.2e-27 126.7 213 36.2
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.1e-26 126.3 144 46.5
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.1e-26 126.3 144 46.5
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.4e-26 125.9 190 35.3
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.8e-26 125.6 148 46.6
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 4.1e-26 124.4 190 34.7
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 9.0e-26 123.2 205 38.0
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.5e-25 122.5 156 43.6
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 2.0e-25 122.1 134 44.0
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 4.5e-25 120.9 144 44.4
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 4.5e-25 120.9 205 38.0
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 5.8e-25 120.6 143 46.2
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 5.8e-25 120.6 167 41.9
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 7.6e-25 120.2 133 46.6
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.0e-24 119.8 157 43.3
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 1.3e-24 119.4 160 43.1
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.3e-24 119.4 203 34.0
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.7e-24 119.0 145 44.8
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 2.2e-24 118.6 174 41.4
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 5.0e-24 117.5 190 38.4
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 5.0e-24 117.5 174 41.4
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 8.4e-24 116.7 91 60.4
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.1e-23 116.3 143 43.4
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 1.4e-23 115.9 178 38.8
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 1.9e-23 115.5 210 39.5
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 3.2e-23 114.8 201 34.8
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 3.2e-23 114.8 139 45.3
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 4.2e-23 114.4 160 40.6
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 4.2e-23 114.4 163 40.5
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 5.5e-23 114.0 164 42.7
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 7.1e-23 113.6 134 42.5
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 9.3e-23 113.2 151 40.4
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 9.3e-23 113.2 198 37.4
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 1.6e-22 112.5 133 42.9
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 3.5e-22 111.3 146 39.0
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.3e-21 109.4 142 41.5
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 3.0e-21 108.2 163 39.3
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 1.1e-20 106.3 151 39.7
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 1.1e-20 106.3 189 35.4
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 1.1e-20 106.3 204 32.8
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.5e-20 105.9 175 40.0
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 1.9e-20 105.5 157 38.2
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 3.3e-20 104.8 205 37.1
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 7.4e-20 103.6 212 34.4
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 9.7e-20 103.2 195 35.4
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.3e-19 102.8 144 39.6
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 1.6e-19 102.4 107 48.6
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 2.2e-19 102.1 191 35.1
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 2.8e-19 101.7 137 38.7
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 3.7e-19 101.3 144 39.6
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.7e-19 101.3 144 40.3
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 8.2e-19 100.1 208 31.7
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 1.2e-17 96.3 118 40.7
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 2.0e-17 95.5 86 50.0
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 2.6e-17 95.1 145 39.3
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 7.7e-17 93.6 161 37.9
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 1.7e-16 92.4 133 41.4
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 1.7e-16 92.4 132 38.6
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 2.9e-16 91.7 124 42.7
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 3.8e-16 91.3 161 33.5
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 6.5e-16 90.5 124 41.9
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 1.1e-15 89.7 123 42.3
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 1.1e-15 89.7 123 42.3
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 1.1e-15 89.7 123 42.3
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 1.4e-15 89.4 122 41.0
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 2.5e-15 88.6 90 45.6
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 5.5e-15 87.4 132 33.3
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.2e-14 86.3 90 45.6
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 6.1e-14 84.0 98 39.8
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 7.9e-14 83.6 96 41.7
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 1.8e-13 82.4 141 35.5
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 6.7e-13 80.5 132 35.6
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 1.1e-12 79.7 171 33.3
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.5e-12 79.3 87 44.8
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 2.5e-12 78.6 90 42.2
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 9.7e-12 76.6 106 38.7
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 4.8e-11 74.3 170 31.8
CARHR014470 Cardamine hirsuta HOM05D004824 ORTHO05D017526 5.3e-10 70.9 125 36.0
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 1.5e-09 69.3 59 50.8
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 1.5e-09 69.3 195 30.3
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.3e-08 66.2 128 26.6
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.3e-08 66.2 128 26.6
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.3e-08 66.2 128 26.6
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 2.9e-08 65.1 84 42.9
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.9e-08 65.1 128 26.6
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.9e-08 65.1 128 26.6
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 8.5e-08 63.5 133 27.1
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 1.1e-07 63.2 92 37.0
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 1.1e-07 63.2 74 37.8
SGA_v2.0_scaffold17G08192 Striga asiatica HOM05D004824 ORTHO05D003903 1.4e-07 62.8 195 30.8
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 1.4e-07 62.8 69 39.1
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 2.5e-07 62.0 98 38.8
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 3.2e-07 61.6 87 39.1
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 9.4e-07 60.1 77 37.7
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 9.4e-07 60.1 94 35.1
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.7e-06 58.5 130 25.4
SHI35543 Sapria himalayana HOM05D008459 ORTHO05D003903 3.6e-06 58.2 74 33.8
SHI48935 Sapria himalayana HOM05D008459 ORTHO05D003903 3.6e-06 58.2 76 36.8
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 3.6e-06 58.2 134 26.9
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 7.9e-06 57.0 212 29.2
SHI51070 Sapria himalayana HOM05D008459 ORTHO05D003903 7.9e-06 57.0 68 41.2


User provided reference genes

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