Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 2.7e-161 572.0 304 100.0
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 5.0e-139 498.0 304 85.5
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 1.4e-128 463.4 304 81.2
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.4e-125 452.6 304 77.0
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 2.4e-125 452.6 304 78.0
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 5.3e-125 451.4 304 78.6
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 5.3e-125 451.4 304 76.6
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.2e-124 450.3 305 77.4
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.2e-124 450.3 304 78.0
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 3.5e-124 448.7 304 76.3
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 7.7e-124 447.6 304 76.0
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 7.7e-124 447.6 304 76.0
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 7.7e-124 447.6 304 76.0
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.7e-123 446.4 291 83.2
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.2e-123 446.0 304 77.3
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 5.5e-122 441.4 304 76.0
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 9.4e-122 440.7 304 75.3
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.2e-121 440.3 295 78.0
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.0e-120 437.2 304 77.3
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 4.0e-120 435.3 304 74.0
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 4.4e-119 431.8 304 74.3
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 4.4e-119 431.8 305 76.7
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 5.7e-119 431.4 304 73.4
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 9.7e-119 430.6 304 73.4
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 1.3e-118 430.3 302 75.2
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.7e-118 429.9 304 74.0
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 4.8e-118 428.3 304 74.3
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 4.8e-118 428.3 304 74.3
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.4e-117 426.0 297 75.1
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 2.4e-117 426.0 304 73.7
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 3.1e-117 425.6 297 75.8
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 5.3e-117 424.9 304 73.4
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 5.3e-117 424.9 304 73.4
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 7.0e-117 424.5 303 72.3
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 7.0e-117 424.5 303 72.3
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.6e-116 423.3 304 73.4
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.7e-116 422.5 304 74.3
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 2.7e-116 422.5 297 74.4
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 3.5e-116 422.2 297 75.8
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 7.7e-116 421.0 303 73.9
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.9e-115 419.1 304 72.0
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 3.8e-115 418.7 304 71.7
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 3.8e-115 418.7 281 79.0
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 5.0e-115 418.3 296 72.6
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 6.5e-115 417.9 304 73.0
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 1.1e-114 417.2 297 74.4
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.9e-114 416.4 295 73.9
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.5e-114 416.0 304 71.7
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 2.5e-114 416.0 281 77.6
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.5e-114 416.0 291 73.9
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 2.5e-114 416.0 297 74.4
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 3.2e-114 415.6 295 72.9
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.2e-114 415.6 304 73.0
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 4.2e-114 415.2 291 74.2
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 1.6e-113 413.3 304 71.4
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.0e-112 410.6 297 72.1
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.8e-112 409.8 305 72.1
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 2.3e-112 409.5 290 73.8
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 4.0e-112 408.7 291 74.6
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 8.8e-112 407.5 304 72.4
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.2e-111 407.1 304 72.4
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 1.2e-111 407.1 305 71.1
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.5e-111 406.8 295 73.6
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 9.8e-111 404.1 297 71.4
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 2.2e-110 402.9 305 71.1
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 4.8e-110 401.7 293 71.3
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 6.3e-110 401.4 291 72.9
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.1e-109 400.6 304 70.7
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.8e-109 399.8 304 71.1
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.1e-109 398.7 291 73.2
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 5.4e-109 398.3 305 68.9
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 7.0e-109 397.9 304 68.1
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.5e-108 395.6 304 70.1
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 4.5e-108 395.2 291 71.1
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 7.7e-108 394.4 305 67.9
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 7.7e-108 394.4 304 68.1
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.0e-107 394.0 298 70.5
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 3.8e-107 392.1 305 68.2
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 8.6e-107 391.0 304 68.1
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 8.6e-107 391.0 304 68.8
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.9e-106 389.8 292 69.5
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.9e-106 389.8 297 70.0
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 7.2e-106 387.9 300 68.3
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.2e-105 387.1 308 66.9
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 1.6e-105 386.7 305 67.5
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.6e-105 386.7 295 68.5
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 2.1e-105 386.3 310 66.5
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 2.8e-105 386.0 309 66.3
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 3.6e-105 385.6 304 67.4
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 6.1e-105 384.8 294 69.7
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 1.2e-103 380.6 306 66.3
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 4.4e-103 378.6 292 67.8
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 2.2e-102 376.3 296 66.6
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.2e-102 376.3 300 66.3
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.3e-102 374.4 281 71.9
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 9.2e-101 370.9 304 65.5
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 5.9e-100 368.2 305 65.2
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 5.0e-99 365.2 305 64.3
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 5.6e-98 361.7 306 64.1
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 9.5e-98 360.9 273 71.8
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.0e-96 357.5 281 69.8
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.6e-95 352.8 299 60.5
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 4.4e-95 352.1 281 66.5
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 7.5e-95 351.3 290 63.1
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 6.2e-89 331.6 297 61.6
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 4.1e-85 318.9 286 63.3
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 5.1e-75 285.4 229 67.7
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 1.2e-73 280.8 295 54.9
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.6e-73 280.4 311 50.2
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 2.1e-73 280.0 195 75.9
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 9.3e-69 264.6 193 74.1
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 9.0e-64 248.1 295 48.5
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 2.4e-61 240.0 289 49.1
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 9.3e-61 238.0 200 66.0
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 1.9e-58 230.3 163 72.4
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 9.9e-55 218.0 159 69.8
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.3e-54 217.6 191 59.2
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.2e-52 211.1 139 77.7
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.6e-52 210.7 290 47.6
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 5.1e-51 205.7 331 40.5
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 2.1e-49 200.3 142 71.8
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 4.2e-45 186.0 242 48.3
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 3.3e-42 176.4 208 51.4
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 6.1e-36 155.6 182 47.3
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.3e-33 147.9 99 73.7
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.6e-33 147.5 186 47.8
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 3.7e-33 146.4 111 73.9
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.1e-32 144.8 169 50.3
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 2.4e-32 143.7 109 68.8
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.1e-24 116.3 97 68.0
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 1.4e-19 101.3 290 30.3
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.8e-19 100.9 86 58.1
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 6.3e-17 92.4 60 71.7
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.8e-16 90.9 85 65.9
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.4e-16 90.5 172 35.5
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 1.6e-15 87.8 58 67.2
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 2.0e-15 87.4 52 78.8
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 4.2e-13 79.7 311 27.0


User provided reference genes

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