Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 1.5e-161 572.8 295 100.0
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 7.8e-97 357.8 282 69.9
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.2e-92 344.0 297 67.0
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 9.2e-90 334.3 283 62.9
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 2.3e-88 329.7 277 65.0
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 4.3e-87 325.5 297 64.6
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 5.6e-87 325.1 285 62.8
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 2.1e-86 323.2 293 63.5
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 4.0e-85 318.9 297 61.3
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 6.8e-85 318.2 297 62.0
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 6.8e-85 318.2 297 62.0
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 8.9e-85 317.8 293 62.8
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.5e-84 317.0 297 62.3
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 2.6e-84 316.2 302 61.9
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 3.4e-84 315.8 266 65.8
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 6.4e-83 311.6 284 61.3
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 4.2e-82 308.9 298 60.7
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 6.0e-81 305.1 299 59.9
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 3.9e-80 302.4 296 60.1
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 1.9e-79 300.1 297 58.2
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 5.6e-79 298.5 296 57.4
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 2.1e-78 296.6 251 66.1
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 3.6e-78 295.8 286 58.7
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 4.7e-78 295.4 269 62.1
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 6.2e-78 295.0 288 59.4
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 2.4e-77 293.1 267 62.9
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 2.4e-77 293.1 286 58.4
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 3.1e-77 292.7 247 66.0
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 4.0e-77 292.4 282 59.6
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 6.9e-77 291.6 303 57.1
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 1.2e-76 290.8 287 59.6
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 3.4e-76 289.3 274 58.4
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 5.8e-76 288.5 297 59.6
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 5.8e-76 288.5 296 57.8
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 7.6e-76 288.1 297 55.9
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 8.4e-75 284.6 292 56.5
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 1.4e-74 283.9 289 58.1
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.4e-74 283.9 296 57.8
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 4.2e-74 282.3 290 59.0
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 5.4e-74 282.0 296 59.8
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 4.6e-73 278.9 289 58.5
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.0e-72 277.7 298 58.4
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 1.3e-72 277.3 279 60.2
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 2.3e-72 276.6 255 60.8
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 2.3e-72 276.6 294 55.8
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 5.1e-72 275.4 302 53.6
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.5e-71 273.9 296 53.0
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 2.5e-71 273.1 295 54.2
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 3.3e-71 272.7 305 56.4
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.3e-71 272.3 298 53.4
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 5.6e-71 271.9 308 56.8
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 7.3e-71 271.6 290 54.8
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 9.6e-71 271.2 286 58.0
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 9.6e-71 271.2 300 56.3
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 9.6e-71 271.2 300 56.3
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.6e-70 270.4 299 55.5
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 2.1e-70 270.0 300 56.7
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 2.8e-70 269.6 295 53.2
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 4.8e-70 268.9 259 60.6
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 6.2e-70 268.5 296 54.4
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.1e-69 267.7 315 51.7
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 1.8e-69 266.9 286 56.6
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 1.8e-69 266.9 273 57.9
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.4e-69 266.5 285 53.7
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 3.1e-69 266.2 291 55.7
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 4.0e-69 265.8 259 59.1
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 9.0e-69 264.6 294 53.4
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 1.2e-68 264.2 300 54.7
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 1.2e-68 264.2 300 54.7
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 1.2e-68 264.2 285 56.5
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 2.6e-68 263.1 262 58.8
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 4.5e-68 262.3 293 55.3
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 5.8e-68 261.9 299 53.5
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 7.6e-68 261.5 296 51.4
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.7e-67 260.4 291 54.3
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.2e-67 260.0 300 53.0
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 2.9e-67 259.6 274 58.0
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.1e-66 257.7 301 53.2
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.1e-66 257.7 279 55.6
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.9e-66 256.9 299 54.8
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 3.2e-66 256.1 305 53.1
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 5.4e-66 255.4 298 56.4
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 5.4e-66 255.4 299 52.8
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 7.1e-66 255.0 296 53.4
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.2e-65 254.2 285 54.7
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 3.5e-65 252.7 277 57.0
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 3.5e-65 252.7 290 55.2
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 4.6e-65 252.3 259 58.7
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 1.0e-64 251.1 362 45.3
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 1.5e-63 247.3 317 50.5
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.8e-61 240.4 277 50.5
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.4e-61 240.0 299 50.2
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 6.9e-61 238.4 259 52.5
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 9.0e-61 238.0 296 52.7
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 2.0e-60 236.9 257 54.1
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 2.6e-60 236.5 250 61.6
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 2.6e-60 236.5 304 52.6
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.2e-59 233.4 235 60.4
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 2.9e-59 233.0 306 50.7
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 3.8e-59 232.6 257 53.3
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 1.3e-56 224.2 296 52.0
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.3e-56 224.2 301 49.5
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 6.7e-56 221.9 307 52.4
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 3.3e-55 219.5 301 48.8
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 5.6e-55 218.8 219 61.2
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.3e-54 217.6 255 53.7
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 1.2e-52 211.1 195 63.6
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.5e-52 210.7 277 49.5
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.5e-52 210.7 268 50.7
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 2.6e-52 209.9 319 45.5
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 2.6e-52 209.9 277 51.6
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.3e-51 207.6 265 49.8
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 3.8e-51 206.1 261 53.6
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 5.5e-50 202.2 265 49.4
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 5.5e-50 202.2 265 49.4
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-49 201.1 305 46.6
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.5e-47 193.4 298 43.6
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 7.7e-44 181.8 298 44.0
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 4.2e-42 176.0 168 60.7
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 4.6e-41 172.6 239 49.4
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 3.3e-39 166.4 154 62.3
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 1.3e-38 164.5 310 38.1
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.7e-38 162.9 264 42.8
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.4e-37 161.0 302 38.4
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 5.3e-37 159.1 182 56.0
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 6.9e-37 158.7 263 41.4
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 2.2e-35 153.7 230 39.1
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 2.9e-35 153.3 243 44.0
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 3.8e-35 152.9 273 39.9
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.1e-29 134.8 278 38.1
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.4e-29 134.4 285 36.1
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 4.2e-26 122.9 219 42.9
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 2.1e-25 120.6 98 70.4
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.8e-24 117.5 276 34.4
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 2.7e-17 93.6 173 41.0
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 7.5e-15 85.5 83 49.4
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 1.3e-11 74.7 57 61.4
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 5.0e-11 72.8 63 68.3
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 6.5e-11 72.4 89 43.8
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 9.4e-10 68.6 243 31.3
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-08 65.1 111 38.7
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.8e-08 64.3 50 58.0
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 6.8e-08 62.4 123 29.3
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 4.4e-07 59.7 95 37.9


User provided reference genes

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