Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 1.2e-132 476.5 240 100.0
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 6.5e-110 401.0 240 83.3
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 7.2e-109 397.5 240 82.1
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 7.2e-109 397.5 241 82.6
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 3.6e-108 395.2 240 81.7
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.3e-107 392.5 228 83.8
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 3.0e-107 392.1 242 81.4
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 4.0e-107 391.7 240 82.1
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 8.8e-107 390.6 240 80.8
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 8.8e-107 390.6 228 83.8
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.5e-106 389.8 240 81.7
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 2.6e-106 389.0 228 83.3
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 5.7e-106 387.9 240 81.2
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 7.5e-106 387.5 240 80.0
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 9.8e-106 387.1 240 80.0
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 2.2e-105 386.0 241 79.3
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 2.8e-105 385.6 240 80.0
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 3.7e-105 385.2 231 82.3
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.7e-105 385.2 231 82.3
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.7e-105 385.2 231 82.3
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 3.7e-105 385.2 239 80.3
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.1e-104 383.6 231 81.4
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.1e-104 383.6 231 81.8
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.1e-104 383.6 231 81.8
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.1e-104 383.6 236 80.5
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 1.1e-104 383.6 240 80.4
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.1e-104 383.6 236 78.8
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 1.4e-104 383.3 240 79.6
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 3.1e-104 382.1 240 77.9
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 4.1e-104 381.7 240 77.9
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 7.0e-104 380.9 240 77.9
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 7.0e-104 380.9 240 77.9
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 9.1e-104 380.6 240 80.0
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 1.6e-103 379.8 240 76.7
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 2.7e-103 379.0 240 77.9
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 2.7e-103 379.0 231 80.1
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 3.5e-103 378.6 229 79.5
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 4.5e-103 378.3 218 83.0
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 4.5e-103 378.3 218 83.0
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 5.9e-103 377.9 240 78.3
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 5.9e-103 377.9 240 78.3
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 7.7e-103 377.5 240 77.9
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 7.7e-103 377.5 229 79.9
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 7.7e-103 377.5 240 78.8
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 1.3e-102 376.7 218 83.5
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 1.3e-102 376.7 218 81.7
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 2.9e-102 375.6 240 77.5
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 2.9e-102 375.6 241 78.0
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 3.8e-102 375.2 240 77.5
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 3.8e-102 375.2 240 77.1
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 3.8e-102 375.2 240 76.2
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.0e-102 374.8 235 80.0
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 5.0e-102 374.8 240 77.1
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 8.5e-102 374.0 240 77.1
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 1.1e-101 373.6 240 76.7
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 1.1e-101 373.6 229 78.6
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.5e-101 373.2 218 81.2
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 3.2e-101 372.1 240 76.7
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 5.5e-101 371.3 218 80.7
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 7.2e-101 370.9 240 77.5
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 7.2e-101 370.9 240 75.4
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 9.5e-101 370.5 240 77.9
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 1.2e-100 370.2 236 75.8
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 2.1e-100 369.4 229 78.2
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 2.8e-100 369.0 240 76.7
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 3.6e-100 368.6 240 75.8
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 4.7e-100 368.2 240 75.0
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 8.0e-100 367.5 240 75.4
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 8.0e-100 367.5 233 78.1
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 8.0e-100 367.5 229 77.7
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 1.8e-99 366.3 240 75.8
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 2.3e-99 365.9 236 74.6
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 4.0e-99 365.2 236 74.2
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.2e-98 363.6 236 73.7
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 1.5e-98 363.2 229 81.7
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 2.6e-98 362.5 240 77.5
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 3.4e-98 362.1 241 75.9
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.4e-98 362.1 227 77.5
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 1.7e-97 359.8 237 75.1
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 1.7e-97 359.8 241 75.1
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 1.7e-97 359.8 240 74.6
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 2.2e-97 359.4 240 74.6
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 4.9e-97 358.2 236 75.0
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 6.3e-97 357.8 240 75.4
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 8.3e-97 357.5 234 74.8
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 2.4e-96 355.9 240 72.9
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 3.1e-96 355.5 229 76.0
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 3.1e-96 355.5 218 78.4
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 4.1e-96 355.1 241 74.7
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 5.4e-96 354.8 238 74.8
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 7.0e-96 354.4 240 74.6
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 7.0e-96 354.4 240 72.1
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 9.2e-96 354.0 227 75.8
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 1.2e-95 353.6 241 74.7
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 1.6e-95 353.2 233 74.7
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 1.6e-95 353.2 240 74.2
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 3.5e-95 352.1 229 76.4
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 4.5e-95 351.7 229 75.1
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 1.3e-94 350.1 230 74.8
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 2.3e-94 349.4 240 72.5
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 2.9e-94 349.0 237 73.4
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 2.9e-94 349.0 306 62.1
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 7.3e-93 344.4 229 74.7
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 3.6e-92 342.0 218 76.1
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 2.3e-91 339.3 256 67.6
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 3.0e-91 339.0 234 70.1
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 5.2e-91 338.2 242 72.7
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 1.2e-90 337.0 240 71.2
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 1.5e-90 336.7 323 58.2
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 5.4e-88 328.2 227 68.7
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 2.0e-87 326.2 229 72.5
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 2.0e-87 326.2 236 69.5
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 2.7e-87 325.9 187 83.4
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 1.9e-85 319.7 218 71.6
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 8.0e-84 314.3 240 67.9
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 1.8e-83 313.2 240 68.3
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 2.6e-82 309.3 216 67.6
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 3.4e-82 308.9 216 66.7
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 9.8e-82 307.4 188 80.9
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 3.7e-81 305.4 192 75.5
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 1.2e-79 300.4 234 67.5
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 1.3e-78 297.0 198 72.7
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 3.9e-78 295.4 218 62.8
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 6.6e-78 294.7 198 73.7
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 4.4e-74 282.0 236 65.3
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.5e-69 266.9 197 67.5
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 7.3e-69 264.6 165 80.6
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 2.6e-66 256.1 168 72.0
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 1.7e-57 226.9 150 70.0
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 2.2e-57 226.5 218 52.8
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 2.8e-44 183.0 107 88.8
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 6.4e-41 171.8 119 65.5
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 6.2e-36 155.2 201 38.8
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 2.5e-29 133.3 97 71.1
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 1.1e-24 117.9 209 32.5
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.8e-06 57.4 45 51.1


User provided reference genes

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