Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 1.2e-89 333.2 172 100.0
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.1e-74 283.5 168 85.7
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 1.2e-70 270.0 167 80.8
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 3.4e-68 261.9 167 83.2
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.7e-67 259.6 167 80.2
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 2.9e-67 258.8 167 80.2
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 1.1e-66 256.9 167 79.0
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 1.4e-66 256.5 167 80.8
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 1.9e-66 256.1 171 77.2
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 4.1e-66 255.0 171 76.6
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.2e-65 253.4 175 77.7
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 2.1e-65 252.7 171 76.0
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 3.5e-65 251.9 174 75.9
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 6.0e-65 251.1 175 75.4
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 6.0e-65 251.1 174 77.6
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 7.8e-65 250.8 175 75.4
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 2.3e-64 249.2 176 75.6
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 3.9e-64 248.4 172 75.0
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 3.9e-64 248.4 174 77.0
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 6.6e-64 247.7 175 74.3
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 6.6e-64 247.7 174 75.9
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 5.6e-63 244.6 174 76.4
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 5.6e-63 244.6 174 76.4
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 7.3e-63 244.2 176 73.9
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 7.3e-63 244.2 173 75.7
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 7.3e-63 244.2 172 74.4
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 7.3e-63 244.2 174 73.0
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.6e-62 243.0 175 74.9
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.6e-62 243.0 175 74.9
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 4.7e-62 241.5 175 73.7
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 4.7e-62 241.5 170 72.9
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 4.7e-62 241.5 173 74.0
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.4e-61 240.0 173 74.6
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 1.8e-61 239.6 171 73.1
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 2.4e-61 239.2 169 73.4
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 2.4e-61 239.2 173 74.0
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 2.4e-61 239.2 171 71.9
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 9.0e-61 237.3 177 74.0
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 9.0e-61 237.3 177 74.0
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 9.0e-61 237.3 173 72.3
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 1.2e-60 236.9 170 74.1
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.5e-60 236.5 171 74.3
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 2.0e-60 236.1 170 74.7
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 2.0e-60 236.1 182 72.0
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 4.4e-60 235.0 176 69.9
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 5.8e-60 234.6 172 72.1
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 5.8e-60 234.6 174 73.0
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 5.8e-60 234.6 173 74.0
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 2.9e-59 232.3 172 73.3
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 3.8e-59 231.9 168 74.4
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 3.8e-59 231.9 167 70.7
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 3.8e-59 231.9 167 70.7
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 4.9e-59 231.5 173 69.9
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 1.4e-58 229.9 172 73.3
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 1.9e-58 229.6 171 70.8
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 1.9e-58 229.6 170 70.0
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 2.4e-58 229.2 172 71.5
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 5.4e-58 228.0 176 70.5
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.2e-57 226.9 174 69.0
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.6e-57 226.5 171 71.9
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.6e-57 226.5 167 71.3
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 3.5e-57 225.3 178 72.5
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 4.6e-57 224.9 178 71.9
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 4.6e-57 224.9 172 70.3
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 4.6e-57 224.9 180 68.3
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 6.0e-57 224.6 172 70.3
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 6.0e-57 224.6 168 71.4
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 1.7e-56 223.0 168 70.2
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.3e-56 222.6 174 70.1
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 2.3e-56 222.6 171 69.0
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 5.1e-56 221.5 174 70.7
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 6.6e-56 221.1 175 69.1
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 6.6e-56 221.1 174 69.5
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.1e-55 220.3 174 68.4
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.9e-55 219.5 171 70.8
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 2.5e-55 219.2 172 67.4
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 1.3e-54 216.9 170 68.2
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.3e-54 216.9 149 73.8
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.6e-54 216.5 172 70.3
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.6e-54 216.5 172 70.3
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 3.6e-54 215.3 177 66.7
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 4.8e-54 214.9 171 67.3
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 6.2e-54 214.5 172 69.8
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 1.1e-53 213.8 171 66.7
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 1.8e-53 213.0 170 67.1
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 2.4e-53 212.6 172 66.3
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 2.4e-53 212.6 170 69.4
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 4.0e-53 211.8 171 66.7
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 4.0e-53 211.8 171 66.7
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 4.0e-53 211.8 176 66.5
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 1.2e-52 210.3 176 69.3
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 1.2e-52 210.3 172 68.0
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 2.0e-52 209.5 170 65.3
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 2.0e-52 209.5 172 69.8
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.6e-52 209.1 171 65.5
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 4.5e-52 208.4 167 66.5
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 5.8e-52 208.0 172 65.7
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 5.8e-52 208.0 171 65.5
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 9.9e-52 207.2 172 65.1
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 9.9e-52 207.2 172 65.7
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.3e-51 206.8 167 64.1
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 4.9e-51 204.9 170 64.1
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 4.9e-51 204.9 170 64.1
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 4.9e-51 204.9 172 64.5
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 6.4e-51 204.5 171 66.7
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 6.4e-51 204.5 181 63.0
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 8.4e-51 204.1 170 64.1
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 8.4e-51 204.1 173 63.6
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.1e-50 203.8 167 63.5
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.1e-50 203.8 170 63.5
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 1.6e-49 199.9 167 64.7
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 1.9e-47 193.0 116 81.9
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 2.4e-45 186.0 149 66.4
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 4.0e-45 185.3 175 60.6
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.2e-44 183.7 148 66.9
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 1.3e-43 180.3 171 60.2
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 1.3e-43 180.3 164 59.1
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 3.8e-43 178.7 146 71.2
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 9.3e-42 174.1 170 58.8
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 9.3e-42 174.1 170 58.8
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 1.6e-41 173.3 146 69.9
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 1.3e-40 170.2 166 56.0
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 2.0e-36 156.4 141 63.1
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 7.6e-36 154.5 142 64.1
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.1e-34 150.6 142 62.7
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 7.9e-33 144.4 82 79.3
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 5.7e-31 138.3 129 65.9
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 3.1e-29 132.5 129 55.8
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 2.6e-28 129.4 73 82.2
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 5.9e-28 128.3 73 80.8
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 7.6e-28 127.9 71 83.1
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 2.9e-27 125.9 73 79.5
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 2.7e-25 119.4 170 48.8
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 7.9e-25 117.9 132 50.0
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.0e-24 117.5 162 43.8
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 4.3e-23 112.1 96 63.5
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.2e-20 104.0 103 63.1
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 5.0e-19 98.6 73 64.4
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 1.4e-18 97.1 111 58.6
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 1.0e-16 90.9 87 54.0
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 4.4e-15 85.5 79 53.2
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 1.3e-14 84.0 105 46.7
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 6.9e-13 78.2 114 49.1
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 5.9e-12 75.1 109 53.2
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 3.6e-09 65.9 99 46.5
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 1.3e-06 57.4 29 75.9
unitig_736.g22678 Utricularia gibba HOM05D005188 ORTHO05D006153 8.2e-06 54.7 80 46.2


User provided reference genes

Program Settings