Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 3.9e-102 374.8 189 100.0
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 2.1e-71 272.7 159 86.8
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 3.6e-71 271.9 157 84.1
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.3e-68 263.5 157 82.2
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 4.9e-68 261.5 157 80.3
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 4.9e-68 261.5 164 82.3
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 8.3e-68 260.8 157 80.9
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 8.3e-68 260.8 157 81.5
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.1e-67 260.4 157 80.9
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 3.2e-67 258.8 157 80.9
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 7.0e-67 257.7 159 79.2
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 7.0e-67 257.7 158 78.5
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 1.2e-66 256.9 157 81.5
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 1.6e-66 256.5 157 79.6
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 3.5e-66 255.4 157 80.3
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 3.5e-66 255.4 159 79.2
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 4.6e-66 255.0 159 78.6
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 7.8e-66 254.2 159 77.4
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 7.8e-66 254.2 159 77.4
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 7.8e-66 254.2 157 80.9
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.0e-65 253.8 157 79.0
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 1.7e-65 253.1 157 77.1
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.7e-65 253.1 159 77.4
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 2.3e-65 252.7 158 74.7
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 2.3e-65 252.7 156 79.5
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 2.3e-65 252.7 157 79.0
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 2.3e-65 252.7 169 76.9
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 3.0e-65 252.3 159 76.1
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 3.9e-65 251.9 157 75.8
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 5.0e-65 251.5 159 76.7
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 5.0e-65 251.5 159 75.5
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 6.6e-65 251.1 159 75.5
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 8.6e-65 250.8 157 75.8
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 8.6e-65 250.8 157 77.7
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 8.6e-65 250.8 159 76.1
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 1.1e-64 250.4 159 78.6
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.5e-64 250.0 159 74.8
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.5e-64 250.0 157 77.1
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.9e-64 249.6 159 76.7
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 2.5e-64 249.2 159 74.2
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 2.5e-64 249.2 159 78.6
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.5e-64 249.2 157 77.1
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.5e-64 249.2 157 77.1
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 2.5e-64 249.2 157 76.4
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 3.3e-64 248.8 159 75.5
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 4.3e-64 248.4 157 77.7
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 5.6e-64 248.1 159 73.6
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 5.6e-64 248.1 159 77.4
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 5.6e-64 248.1 157 77.1
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 5.6e-64 248.1 157 76.4
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 5.6e-64 248.1 157 77.1
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 7.3e-64 247.7 159 73.6
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 7.3e-64 247.7 157 75.2
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 7.3e-64 247.7 157 77.7
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 9.5e-64 247.3 159 73.6
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 9.5e-64 247.3 159 74.2
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.2e-63 246.9 159 77.4
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 1.2e-63 246.9 159 74.2
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 1.6e-63 246.5 159 74.2
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.6e-63 246.5 157 76.4
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.6e-63 246.5 157 76.4
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.6e-63 246.5 157 75.8
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 2.1e-63 246.1 159 74.2
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 2.1e-63 246.1 159 74.2
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 2.8e-63 245.7 158 76.6
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 2.8e-63 245.7 157 76.4
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 2.8e-63 245.7 157 77.7
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.6e-63 245.4 159 76.7
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 6.2e-63 244.6 159 73.0
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 6.2e-63 244.6 157 77.7
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 8.0e-63 244.2 157 75.8
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 1.4e-62 243.4 160 76.2
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.8e-62 243.0 157 75.2
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 5.2e-62 241.5 157 76.4
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 6.8e-62 241.1 157 75.8
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 8.9e-62 240.7 157 74.5
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 2.0e-61 239.6 157 74.5
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 2.0e-61 239.6 157 75.2
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 3.4e-61 238.8 157 73.9
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 3.4e-61 238.8 157 74.5
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 4.4e-61 238.4 157 73.9
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 7.5e-61 237.7 167 70.1
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 7.5e-61 237.7 157 73.2
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 9.8e-61 237.3 157 74.5
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.2e-60 236.1 157 72.0
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 2.9e-60 235.7 157 72.0
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 3.7e-60 235.3 158 73.4
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 4.9e-60 235.0 159 71.1
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 8.3e-60 234.2 157 73.2
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 1.4e-59 233.4 159 70.4
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.9e-59 233.0 159 71.1
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.4e-59 232.6 151 75.5
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 7.8e-58 227.6 159 69.8
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.0e-57 227.3 162 66.7
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 2.3e-57 226.1 140 77.9
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 5.1e-57 224.9 158 71.5
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 5.1e-57 224.9 157 68.2
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 7.3e-56 221.1 157 63.7
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 7.3e-56 221.1 159 67.9
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 3.1e-54 215.7 157 63.7
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 5.2e-54 214.9 156 64.7
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.0e-53 213.0 157 63.1
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 7.1e-51 204.5 150 68.0
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 4.6e-50 201.8 159 67.3
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 8.9e-46 187.6 117 77.8
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 2.6e-45 186.0 123 74.0
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 4.4e-45 185.3 118 74.6
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 6.4e-44 181.4 161 52.8
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.1e-43 180.6 123 70.7
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 2.4e-43 179.5 170 57.1
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 9.0e-38 161.0 95 85.3
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 1.3e-36 157.1 167 47.3
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 3.9e-33 145.6 94 72.3
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 7.3e-32 141.4 161 44.7
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 1.1e-27 127.5 161 47.8
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 1.9e-27 126.7 86 68.6
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 6.7e-25 118.2 95 64.2
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 3.3e-24 115.9 179 39.1
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 3.3e-24 115.9 179 39.1
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 8.1e-23 111.3 77 68.8
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 8.1e-23 111.3 77 68.8
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.3e-20 104.0 104 57.7
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.1e-16 90.9 151 37.1
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.5e-16 90.5 51 84.3
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.9e-16 90.1 52 82.7
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 1.4e-14 84.0 66 62.1
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 1.5e-13 80.5 53 73.6
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.4e-13 79.3 57 64.9
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 1.3e-12 77.4 46 78.3
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.2e-12 76.6 45 75.6
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 6.1e-10 68.6 154 35.7
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 2.3e-09 66.6 50 56.0
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 2.2e-07 60.1 41 78.0
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 6.3e-07 58.5 39 69.2
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 1.8e-06 57.0 36 66.7
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 9.0e-06 54.7 32 78.1


User provided reference genes

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