Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 0.0e+00 1459.9 730 100.0
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 0.0e+00 1225.3 731 82.5
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 0.0e+00 1179.1 731 79.5
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 0.0e+00 1095.1 730 72.7
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 0.0e+00 1085.9 739 72.7
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 0.0e+00 1077.4 730 71.1
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 5.0e-312 1074.7 729 72.3
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 5.0e-312 1074.7 729 72.3
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 4.5e-311 1070.8 730 71.5
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 1.1e-309 1066.2 729 70.9
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 9.6e-306 1053.1 730 70.8
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 1.6e-305 1052.4 730 70.3
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 4.0e-304 1047.7 731 69.6
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 7.6e-303 1043.5 689 72.7
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 1.1e-301 1039.6 713 71.0
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 1.8e-299 1032.3 711 69.9
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 3.3e-298 1028.1 713 71.2
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 7.4e-298 1026.9 724 70.0
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.8e-296 1022.3 711 70.0
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 2.4e-296 1021.9 713 69.3
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 3.1e-296 1021.5 709 67.8
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 4.1e-296 1021.1 713 69.1
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 4.1e-296 1021.1 696 69.8
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 9.0e-296 1020.0 721 68.0
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 5.9e-295 1017.3 711 70.3
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 2.2e-294 1015.4 728 68.8
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 1.6e-292 1009.2 723 68.0
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 1.3e-289 999.6 710 67.9
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 2.2e-289 998.8 714 67.5
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 2.4e-288 995.3 711 68.9
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 5.9e-287 990.7 724 68.0
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 7.7e-287 990.3 726 67.4
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 1.3e-286 989.6 713 68.2
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.3e-286 989.6 711 68.5
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.9e-286 988.4 711 68.5
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 3.2e-285 984.9 730 66.3
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 9.4e-285 983.4 711 66.4
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.7e-284 981.9 730 65.2
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.1e-284 980.7 711 66.0
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 1.0e-283 979.9 711 68.1
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.8e-283 979.2 711 66.1
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 1.8e-283 979.2 725 65.1
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.6e-282 975.3 724 65.2
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 1.3e-281 973.0 705 67.4
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 4.8e-281 971.1 732 66.4
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 4.8e-281 971.1 710 66.6
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 4.5e-279 964.5 712 65.6
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 5.9e-279 964.1 711 66.8
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 2.9e-278 961.8 721 66.4
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 8.5e-278 960.3 712 66.9
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 1.4e-277 959.5 722 67.3
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 2.5e-277 958.7 670 69.3
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 2.5e-277 958.7 721 66.0
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 1.8e-275 952.6 711 65.8
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 4.4e-274 948.0 730 64.8
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 4.4e-274 948.0 711 65.4
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 1.7e-273 946.0 735 63.9
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.4e-272 943.0 736 63.7
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 2.4e-272 942.2 711 65.0
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 2.6e-271 938.7 711 64.6
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 2.6e-271 938.7 711 64.6
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 2.2e-270 935.6 766 62.3
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 3.8e-270 934.9 615 72.2
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 5.0e-270 934.5 716 64.9
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 1.2e-268 929.9 603 75.6
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 1.3e-265 919.8 737 63.8
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 7.7e-263 910.6 719 62.6
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 8.5e-262 907.1 731 62.9
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 4.7e-260 901.4 844 56.8
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 1.8e-259 899.4 688 65.3
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 2.3e-259 899.0 721 63.2
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 1.4e-256 889.8 623 70.8
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 2.1e-252 875.9 719 62.3
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 9.8e-250 867.1 729 60.9
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 9.2e-248 860.5 711 62.6
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 3.6e-244 848.6 712 60.1
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 7.5e-242 840.9 712 60.0
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 7.5e-242 840.9 712 60.0
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 1.3e-241 840.1 713 59.9
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 1.4e-240 836.6 712 59.0
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 1.2e-239 833.6 662 63.1
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 1.2e-239 833.6 712 59.0
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 1.3e-238 830.1 716 59.1
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 4.3e-237 825.1 712 58.0
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 2.1e-236 822.8 714 58.4
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 1.4e-235 820.1 537 72.8
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 4.4e-234 815.1 719 57.9
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 1.1e-232 810.4 613 64.8
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 6.2e-228 794.7 730 56.6
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 6.4e-225 784.6 473 79.1
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 1.4e-216 756.9 731 55.5
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.6e-199 700.3 474 70.3
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.3e-196 690.6 610 57.5
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 1.6e-191 673.7 723 50.2
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 2.1e-191 673.3 457 71.6
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 3.2e-176 622.9 465 63.4
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 2.5e-173 613.2 466 64.6
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 2.9e-169 599.7 743 45.8
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 2.7e-167 593.2 735 44.2
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 3.0e-166 589.7 452 64.2
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 1.5e-162 577.4 418 69.6
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 2.7e-159 566.6 481 59.7
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 5.0e-153 545.8 454 62.8
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 5.3e-147 525.8 431 60.8
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.6e-146 524.2 393 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 1.3e-145 521.2 683 42.9
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 1.4e-131 474.6 381 62.2
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 1.2e-127 461.5 689 40.6
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 1.7e-124 451.1 755 37.5
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 4.0e-118 429.9 740 37.4
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 9.9e-109 398.7 327 59.6
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.7e-108 397.9 296 66.9
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 3.7e-108 396.7 370 57.6
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 5.4e-107 392.9 313 61.0
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.2e-82 312.0 193 78.2
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 2.7e-74 284.3 245 58.0
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 2.2e-68 264.6 204 62.3
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 8.5e-52 209.5 150 68.0
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.8e-49 199.5 315 40.3
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.0e-41 176.0 143 67.1
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 2.8e-39 167.9 116 74.1
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 3.7e-39 167.5 162 51.9
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 3.1e-38 164.5 159 52.2
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 2.3e-33 148.3 98 73.5
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.2e-28 131.7 269 33.1
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 8.5e-28 129.8 563 24.5
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 4.2e-27 127.5 819 22.8
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 1.8e-25 122.1 138 45.7
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.8e-25 119.8 136 50.0
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 4.4e-24 117.5 144 44.4
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.3e-23 113.2 89 61.8
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.0e-22 110.2 84 64.3
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 2.8e-18 98.2 64 68.8
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.7e-15 89.0 115 53.0
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 1.1e-14 86.3 74 54.1
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 2.5e-11 75.1 51 76.5
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.6e-10 72.4 59 62.7
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.0e-09 69.7 56 64.3
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 4.4e-08 64.3 51 54.9
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.3e-07 62.8 52 59.6
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 2.9e-07 61.6 97 37.1
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 4.1e-06 57.8 46 58.7


User provided reference genes

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