Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 1.8e-96 355.9 175 100.0
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 1.9e-87 325.9 175 89.7
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 2.5e-87 325.5 175 90.3
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 90.7
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 9.7e-87 323.6 174 90.2
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.6e-86 322.8 175 89.1
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 2.2e-86 322.4 174 89.1
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 3.7e-86 321.6 175 88.6
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 8.2e-86 320.5 175 88.6
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.1e-85 320.1 174 87.9
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.8e-85 319.3 175 88.6
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 3.1e-85 318.5 174 88.5
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 4.1e-85 318.2 174 87.9
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 4.1e-85 318.2 175 87.4
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 88.0
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 5.3e-85 317.8 174 87.9
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 1.5e-84 316.2 175 85.7
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.5e-84 316.2 175 88.0
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 2.0e-84 315.8 175 86.9
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.6e-84 315.5 175 86.3
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 3.4e-84 315.1 175 85.7
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 4.5e-84 314.7 174 87.4
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.5e-84 314.7 174 87.4
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 4.5e-84 314.7 175 85.7
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.0e-83 313.5 172 86.0
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 1.0e-83 313.5 174 85.6
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 1.3e-83 313.2 175 86.3
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 1.3e-83 313.2 175 86.3
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 1.3e-83 313.2 175 86.3
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 1.3e-83 313.2 175 85.1
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 1.7e-83 312.8 175 84.6
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.7e-83 312.8 171 86.5
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 1.7e-83 312.8 173 85.5
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 2.2e-83 312.4 175 85.1
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 2.2e-83 312.4 174 86.2
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 2.9e-83 312.0 175 84.0
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.9e-83 312.0 174 86.8
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 3.8e-83 311.6 175 84.0
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 3.8e-83 311.6 175 84.6
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 5.0e-83 311.2 172 86.0
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 5.0e-83 311.2 175 85.1
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 5.0e-83 311.2 172 87.2
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 6.5e-83 310.8 173 86.1
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 6.5e-83 310.8 172 86.6
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 1.1e-82 310.1 175 84.0
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 86.6
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 1.4e-82 309.7 173 85.0
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 1.4e-82 309.7 172 86.6
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 1.4e-82 309.7 172 86.0
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.9e-82 309.3 173 85.0
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 1.9e-82 309.3 175 84.0
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.9e-82 309.3 175 84.6
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 1.9e-82 309.3 175 84.6
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 1.9e-82 309.3 172 87.2
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 4.2e-82 308.1 173 85.0
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 7.2e-82 307.4 173 84.4
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 7.2e-82 307.4 175 86.3
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 7.2e-82 307.4 175 84.0
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 9.4e-82 307.0 174 85.1
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 1.2e-81 306.6 172 84.9
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.6e-81 306.2 172 84.9
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 2.1e-81 305.8 171 84.8
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 3.6e-81 305.1 172 84.9
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 4.6e-81 304.7 175 83.4
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 4.6e-81 304.7 172 84.3
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 6.1e-81 304.3 173 83.8
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 6.1e-81 304.3 173 84.4
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.0e-80 303.5 175 82.9
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 1.4e-80 303.1 173 83.2
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 1.4e-80 303.1 173 83.2
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.4e-80 303.1 174 82.2
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 1.4e-80 303.1 175 82.3
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 1.4e-80 303.1 173 82.7
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 1.4e-80 303.1 172 83.1
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 1.4e-80 303.1 172 83.1
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 1.4e-80 303.1 172 83.1
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 1.4e-80 303.1 172 83.1
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 1.8e-80 302.8 175 82.3
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 2.3e-80 302.4 174 83.3
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 3.0e-80 302.0 175 84.6
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 5.1e-80 301.2 172 83.1
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 5.1e-80 301.2 172 83.1
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 5.1e-80 301.2 172 82.0
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 8.8e-80 300.4 172 82.0
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 1.1e-79 300.1 172 82.6
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.1e-79 300.1 172 84.3
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 1.5e-79 299.7 172 83.1
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 2.0e-79 299.3 172 82.6
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 3.3e-79 298.5 190 77.9
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 4.3e-79 298.1 172 83.1
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 4.3e-79 298.1 172 82.0
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 3.1e-77 292.0 181 79.6
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 9.1e-77 290.4 226 66.8
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 7.7e-76 287.3 171 78.9
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.7e-75 286.2 171 78.4
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.5e-74 282.3 159 86.2
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 2.5e-74 282.3 173 78.0
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 4.2e-74 281.6 165 81.2
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.9e-72 275.0 158 85.4
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.8e-69 266.2 153 85.0
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.2e-68 263.5 174 67.2
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.0e-67 260.4 174 66.7
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 3.8e-67 258.5 176 69.3
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 6.5e-67 257.7 151 82.1
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 4.2e-66 255.0 174 66.7
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 2.3e-64 249.2 153 79.7
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 2.8e-62 242.3 138 84.8
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 7.0e-61 237.7 147 78.9
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 3.8e-59 231.9 134 82.8
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.5e-58 229.9 182 65.4
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 2.1e-57 226.1 176 61.9
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 6.1e-57 224.6 130 83.8
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 6.1e-57 224.6 130 83.8
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 6.1e-57 224.6 126 86.5
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 1.4e-56 223.4 127 84.3
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 1.4e-56 223.4 172 67.4
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 2.3e-56 222.6 134 81.3
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 3.0e-56 222.2 130 83.1
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 4.0e-56 221.9 127 83.5
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 2.0e-55 219.5 127 81.9
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 6.3e-54 214.5 128 79.7
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 1.4e-53 213.4 129 79.8
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.5e-52 208.8 163 68.1
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 2.3e-48 196.1 147 70.7
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 2.6e-47 192.6 130 73.1
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 4.9e-46 188.3 128 74.2
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.0e-43 180.6 130 68.5
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 1.7e-38 163.3 131 66.4
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.2e-37 159.1 92 84.8
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 2.3e-35 152.9 96 80.2
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.6e-35 151.4 88 85.2
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.3e-34 149.1 95 78.9
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-33 147.1 90 82.2
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 2.8e-33 146.0 93 75.3
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.6e-33 145.6 92 79.3
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.8e-32 143.3 102 71.6
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.3e-32 142.9 80 82.5
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.8e-32 141.4 96 72.9
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 2.2e-30 136.3 88 75.0
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 3.0e-27 125.9 75 82.7
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.5e-26 122.9 99 62.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.5e-26 122.9 80 75.0
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 4.3e-26 122.1 192 35.9
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.6e-25 119.0 77 77.9
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 3.6e-25 119.0 67 79.1
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 5.1e-19 98.6 90 57.8
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 9.5e-18 94.4 57 77.2
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 1.1e-10 70.9 39 74.4


User provided reference genes

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