Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 2.0e-186 655.6 320 100.0
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.1e-143 512.7 314 78.3
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.7e-137 493.0 318 73.9
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 2.4e-131 472.6 374 63.9
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 5.8e-130 468.0 318 70.1
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 3.8e-129 465.3 318 69.8
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 6.4e-129 464.5 318 69.2
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 7.1e-128 461.1 312 69.2
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 1.1e-125 453.8 333 64.9
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 7.3e-125 451.1 316 68.7
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.3e-124 450.3 314 68.8
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 1.3e-124 450.3 312 67.9
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 2.4e-123 446.0 311 68.2
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 5.3e-123 444.9 313 67.1
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.2e-121 439.5 314 67.2
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 6.4e-121 438.0 315 65.1
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 1.9e-120 436.4 311 67.2
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 5.4e-120 434.9 374 59.4
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 5.4e-120 434.9 311 66.6
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 1.2e-119 433.7 314 68.5
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 1.6e-119 433.3 313 67.7
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 6.0e-119 431.4 311 66.9
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 7.9e-119 431.0 382 58.6
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.8e-118 429.9 325 64.6
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 3.9e-118 428.7 310 65.2
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 5.1e-118 428.3 351 61.0
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 1.9e-117 426.4 312 66.3
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 8.1e-116 421.0 323 66.9
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.3e-113 413.7 362 57.5
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.3e-113 413.7 365 57.8
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.3e-113 413.7 365 57.8
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 2.9e-113 412.5 312 63.8
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 8.4e-113 411.0 287 69.3
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.4e-112 410.2 258 76.4
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 7.1e-112 407.9 313 63.3
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 3.5e-111 405.6 312 61.5
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 1.8e-110 403.3 316 59.8
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 3.9e-110 402.1 314 59.9
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 5.1e-110 401.7 313 61.3
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 6.7e-110 401.4 311 61.7
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 4.3e-109 398.7 318 62.3
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 4.3e-109 398.7 318 62.3
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 5.6e-109 398.3 313 63.9
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.3e-108 397.1 312 61.5
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 2.8e-108 396.0 313 61.0
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 2.8e-108 396.0 309 63.1
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 4.8e-108 395.2 316 61.7
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 4.8e-108 395.2 313 63.9
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 6.2e-108 394.8 366 55.7
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.1e-107 394.0 317 60.9
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.4e-107 392.9 313 62.6
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 6.9e-107 391.3 321 60.4
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 4.5e-106 388.7 339 58.7
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 5.8e-106 388.3 297 63.6
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 1.0e-105 387.5 319 62.7
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 5.5e-104 381.7 315 62.2
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 7.1e-104 381.3 311 61.1
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 2.7e-103 379.4 318 60.4
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 3.5e-103 379.0 309 58.9
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 6.0e-103 378.3 322 59.6
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 7.9e-103 377.9 263 68.1
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.0e-102 377.5 275 65.1
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 1.3e-102 377.1 321 59.8
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 3.0e-102 375.9 305 60.3
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 3.9e-102 375.6 320 60.0
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 2.5e-101 372.9 319 59.6
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 1.6e-100 370.2 322 58.1
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 8.2e-100 367.9 281 64.1
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 2.4e-99 366.3 319 58.6
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 1.5e-98 363.6 311 56.3
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.0e-98 363.2 312 58.0
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 3.4e-98 362.5 333 57.1
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.3e-97 360.5 310 59.7
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.7e-97 360.1 304 59.9
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 1.7e-97 360.1 314 58.9
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 5.0e-97 358.6 330 57.0
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.5e-96 356.3 287 60.6
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 9.3e-96 354.4 330 56.4
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 2.1e-95 353.2 276 63.8
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.0e-94 350.9 277 62.1
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.0e-94 350.9 310 57.1
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.0e-94 350.9 310 57.1
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.6e-92 343.6 290 59.0
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 6.3e-92 341.7 246 67.9
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 1.0e-89 334.3 311 53.4
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 2.5e-88 329.7 188 79.8
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.2e-87 327.4 328 54.0
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 2.3e-86 323.2 229 67.7
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 8.8e-86 321.2 323 52.0
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.2e-84 316.6 191 77.5
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 2.8e-84 316.2 235 66.0
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 4.1e-83 312.4 324 48.8
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 2.0e-82 310.1 228 65.4
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 6.5e-81 305.1 274 56.2
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 8.5e-81 304.7 313 51.1
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 2.5e-80 303.1 222 64.0
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 2.5e-80 303.1 327 50.8
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 2.5e-80 303.1 239 61.9
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 7.9e-79 298.1 221 63.8
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.0e-74 283.5 309 47.6
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 3.5e-74 282.7 238 60.1
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 6.5e-73 278.5 312 49.7
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 1.6e-71 273.9 225 60.0
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.1e-71 273.5 241 56.0
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 4.0e-70 269.2 322 49.1
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 7.5e-69 265.0 325 44.6
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 3.1e-67 259.6 319 48.3
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.7e-66 256.5 331 42.9
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.5e-64 250.0 159 74.2
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 8.0e-63 245.0 150 74.7
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.8e-62 243.8 180 65.6
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 2.6e-61 240.0 179 64.8
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.2e-56 223.0 261 47.1
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 4.2e-56 222.6 129 79.1
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.3e-52 211.1 279 43.0
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 5.9e-50 202.2 179 58.1
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 3.4e-45 186.4 222 45.9
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 5.7e-45 185.7 122 67.2
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 2.3e-41 173.7 152 57.2
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 9.5e-40 168.3 139 59.0
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 3.7e-36 156.4 178 48.9
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 9.2e-35 151.8 100 67.0
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.5e-34 149.8 87 78.2
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.8e-30 137.5 85 71.8
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 7.1e-27 125.6 73 75.3
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.9e-24 117.5 100 60.0
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 9.6e-16 88.6 79 53.2
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.7e-12 77.8 87 46.0
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.2e-12 77.4 68 50.0
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 1.2e-10 71.6 39 82.1
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.2e-10 71.6 39 82.1
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.6e-10 71.2 100 43.0
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 2.7e-10 70.5 38 81.6
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 4.6e-10 69.7 39 79.5
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 1.3e-09 68.2 55 56.4
FAN19G0239 Fragaria x ananassa HOM05D006152 ORTHO05D045810 5.3e-06 56.2 57 52.6


User provided reference genes

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