Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 0.0e+00 1156.0 580 100.0
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 3.1e-246 855.1 541 79.3
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 3.1e-222 775.4 539 70.5
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 4.4e-221 771.5 539 70.1
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 7.1e-219 764.2 535 69.5
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 4.6e-218 761.5 536 69.0
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 7.8e-218 760.8 541 67.5
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.7e-217 759.6 553 69.1
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.9e-216 756.1 550 67.8
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 5.6e-216 754.6 540 68.1
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.3e-215 753.4 521 70.1
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.1e-215 752.7 498 71.1
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.8e-214 749.6 520 69.8
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 5.3e-214 748.0 531 68.7
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.0e-213 746.1 541 66.4
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 2.0e-213 746.1 537 67.2
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 3.4e-213 745.3 541 66.5
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 1.7e-212 743.0 535 67.3
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.2e-212 742.7 548 66.2
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 2.2e-212 742.7 539 68.5
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 2.2e-212 742.7 538 67.3
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 3.8e-212 741.9 557 65.5
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 4.9e-212 741.5 540 66.5
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 6.4e-212 741.1 538 67.3
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 6.4e-212 741.1 547 66.4
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 1.1e-211 740.3 539 66.4
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.4e-211 739.2 548 65.5
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 5.4e-211 738.0 535 66.9
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 4.6e-210 734.9 502 69.5
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 6.0e-210 734.6 555 65.2
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 2.3e-209 732.6 497 69.4
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 4.3e-208 728.4 529 67.9
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 4.3e-208 728.4 551 64.8
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 5.6e-208 728.0 534 67.8
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 7.4e-208 727.6 539 66.2
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 9.6e-208 727.2 521 67.2
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 9.6e-208 727.2 532 66.0
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 1.6e-207 726.5 497 68.4
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 2.8e-207 725.7 513 67.3
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 1.4e-206 723.4 542 66.1
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.4e-206 723.4 541 65.1
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 2.4e-206 722.6 534 66.7
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 5.3e-206 721.5 497 68.6
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 9.0e-206 720.7 499 67.5
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 1.5e-205 719.9 555 64.1
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 2.0e-205 719.5 536 64.2
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 2.0e-205 719.5 504 68.3
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 2.6e-205 719.2 499 67.5
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 9.9e-205 717.2 532 64.8
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 9.9e-205 717.2 533 65.3
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 1.3e-204 716.8 550 63.6
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 1.7e-204 716.5 540 65.0
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 2.2e-204 716.1 544 64.9
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 3.8e-204 715.3 524 66.8
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 3.8e-204 715.3 543 63.2
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 1.1e-203 713.8 539 63.8
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 1.9e-203 713.0 535 64.3
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 3.5e-202 708.8 539 63.3
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 1.0e-201 707.2 507 67.9
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 1.0e-201 707.2 498 67.7
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 2.3e-201 706.1 519 64.9
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.1e-200 703.7 538 63.9
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 4.3e-200 701.8 512 66.2
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 1.1e-198 697.2 502 66.9
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 1.1e-198 697.2 524 65.5
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.4e-198 696.8 537 63.5
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 1.4e-198 696.8 487 67.4
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 5.3e-198 694.9 537 63.1
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 9.0e-198 694.1 543 63.0
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.2e-197 693.7 537 63.3
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 4.5e-197 691.8 556 64.7
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.9e-195 686.4 513 65.3
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 2.5e-195 686.0 504 64.7
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 1.6e-194 683.3 530 64.2
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 2.1e-194 682.9 507 65.7
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 3.5e-194 682.2 427 76.3
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.3e-193 680.2 513 64.5
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-193 679.9 531 62.7
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 6.7e-193 677.9 487 67.1
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 6.7e-193 677.9 545 61.5
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 1.1e-192 677.2 540 62.0
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 4.8e-191 671.8 506 65.6
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 2.6e-189 666.0 481 66.1
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 7.7e-189 664.5 486 66.3
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 7.9e-186 654.4 420 74.0
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 1.8e-185 653.3 500 64.4
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 6.7e-185 651.4 544 59.4
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 1.1e-182 644.0 464 65.5
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 5.0e-180 635.2 510 60.4
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 3.2e-179 632.5 425 72.2
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 4.4e-168 595.5 420 69.3
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 5.7e-168 595.1 393 72.3
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 3.7e-167 592.4 489 59.5
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 5.9e-165 585.1 523 54.9
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 1.4e-161 573.9 381 73.0
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 2.6e-160 569.7 582 53.4
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 6.5e-156 555.1 527 52.6
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 6.5e-156 555.1 527 52.6
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.7e-154 549.7 420 64.5
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.8e-153 547.0 469 55.0
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 1.4e-150 537.3 375 69.3
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 2.0e-149 533.5 539 55.1
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 1.0e-148 531.2 439 59.5
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 6.6e-140 501.9 383 64.2
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 2.8e-138 496.5 390 62.6
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 1.8e-137 493.8 304 76.0
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.2e-125 454.5 535 48.2
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.2e-122 444.5 473 52.0
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 1.6e-122 444.1 508 51.0
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 2.6e-112 410.2 431 52.7
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 5.1e-108 396.0 282 67.0
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 3.1e-89 333.6 461 39.3
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 8.7e-76 288.9 243 60.9
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-68 264.6 240 53.3
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 8.2e-58 229.2 189 58.7
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 4.7e-53 213.4 204 53.4
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 5.0e-47 193.4 160 63.1
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 5.0e-47 193.4 140 64.3
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.4e-44 185.3 133 69.2
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 8.8e-44 182.6 129 65.1
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 5.7e-43 179.9 149 62.4
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 9.8e-43 179.1 123 61.8
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 1.7e-42 178.3 500 30.2
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 1.0e-28 132.5 107 60.7
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 1.0e-28 132.5 107 60.7
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 1.0e-28 132.5 107 60.7
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 6.8e-28 129.8 89 62.9
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 7.8e-24 116.3 133 52.6
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.1e-22 112.5 88 58.0
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.2e-21 109.0 75 66.7
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 6.2e-21 106.7 75 69.3
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 6.4e-10 70.1 291 26.1
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 2.4e-09 68.2 83 47.0
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 1.9e-06 58.5 395 24.3
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 4.3e-06 57.4 302 25.5
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 5.6e-06 57.0 348 24.7


User provided reference genes

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