Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 2.9e-108 395.2 195 100.0
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 8.4e-39 164.5 126 66.7
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.2e-38 162.5 127 67.7
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.6e-37 160.2 123 69.1
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 6.6e-36 154.8 125 65.6
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 7.3e-35 151.4 120 66.7
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 9.6e-35 151.0 119 64.7
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.6e-34 150.2 123 61.0
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.6e-34 150.2 120 65.8
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-33 147.5 119 61.3
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.1e-33 147.5 120 60.8
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.4e-33 147.1 128 62.5
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.8e-33 146.7 120 60.8
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.1e-33 146.0 122 60.7
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 9.0e-33 144.4 122 64.8
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-32 144.1 120 60.0
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.0e-32 143.3 125 62.4
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.6e-32 142.9 130 63.1
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.4e-32 142.5 125 60.8
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.4e-32 142.5 125 60.8
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 3.4e-32 142.5 119 60.5
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 3.4e-32 142.5 116 61.2
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.4e-32 142.1 122 60.7
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 5.8e-32 141.7 122 63.9
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 7.6e-32 141.4 123 61.0
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 7.6e-32 141.4 126 59.5
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 7.6e-32 141.4 119 60.5
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.7e-31 140.2 134 61.2
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.2e-31 139.8 129 60.5
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 8.4e-31 137.9 123 61.8
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 8.4e-31 137.9 120 58.3
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.4e-30 136.3 124 58.1
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 4.2e-30 135.6 116 60.3
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.2e-30 135.6 122 60.7
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 9.3e-30 134.4 137 55.5
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.6e-29 133.7 123 57.7
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.1e-29 133.3 116 59.5
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 2.1e-29 133.3 125 56.8
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 6.0e-29 131.7 122 56.6
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.3e-28 130.6 118 60.2
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-28 130.2 123 52.8
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.7e-28 130.2 129 58.1
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 2.3e-28 129.8 122 58.2
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 3.9e-28 129.0 116 57.8
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 6.6e-28 128.3 120 55.8
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 6.6e-28 128.3 133 55.6
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.7e-28 127.9 120 55.8
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 8.7e-28 127.9 131 54.2
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.5e-27 127.1 133 54.9
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.5e-27 127.1 134 55.2
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.5e-27 127.1 136 53.7
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.5e-27 127.1 129 58.1
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 3.3e-27 125.9 117 56.4
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.3e-27 125.9 126 54.8
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 9.6e-27 124.4 126 54.8
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 2.1e-26 123.2 124 56.5
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 6.2e-26 121.7 128 51.6
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.8e-25 120.2 143 52.4
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 4.0e-25 119.0 122 55.7
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 6.9e-25 118.2 115 54.8
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 9.0e-25 117.9 124 54.8
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 9.0e-25 117.9 120 50.0
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 1.2e-24 117.5 126 51.6
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.5e-24 117.1 124 54.8
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.7e-23 113.6 127 53.5
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.7e-23 113.6 127 53.5
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 4.9e-23 112.1 118 54.2
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 4.9e-23 112.1 143 46.2
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.4e-23 111.7 119 50.4
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 8.4e-23 111.3 110 53.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-22 110.9 126 51.6
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.9e-22 110.2 113 49.6
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 3.2e-22 109.4 118 52.5
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 3.2e-22 109.4 154 45.5
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 4.2e-22 109.0 112 55.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.6e-21 107.1 118 50.0
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 3.5e-21 105.9 118 51.7
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 4.6e-21 105.5 129 50.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 4.6e-21 105.5 129 50.4
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 4.6e-21 105.5 111 47.7
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.6e-21 105.5 123 50.4
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.6e-21 105.5 123 50.4
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 6.0e-21 105.1 126 50.0
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 6.0e-21 105.1 115 54.8
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 6.0e-21 105.1 117 51.3
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 7.9e-21 104.8 122 51.6
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.0e-20 104.4 126 50.0
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.3e-20 104.0 117 51.3
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.8e-20 103.6 129 48.8
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.8e-20 103.6 113 53.1
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.3e-20 103.2 120 51.7
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 2.3e-20 103.2 119 49.6
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 5.1e-20 102.1 126 49.2
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 5.1e-20 102.1 117 51.3
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 5.1e-20 102.1 126 49.2
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 5.1e-20 102.1 119 51.3
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 8.7e-20 101.3 125 49.6
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.1e-19 100.9 122 53.3
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.1e-19 100.9 85 62.4
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.5e-19 100.5 115 50.4
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.5e-19 99.8 142 45.1
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 4.3e-19 99.0 133 48.1
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 5.6e-19 98.6 120 50.8
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 5.6e-19 98.6 121 49.6
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 5.6e-19 98.6 120 50.8
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 7.4e-19 98.2 132 46.2
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.4e-19 98.2 142 44.4
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 7.4e-19 98.2 119 49.6
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 7.4e-19 98.2 124 45.2
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.6e-19 97.8 122 45.9
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 9.6e-19 97.8 120 48.3
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.3e-18 97.4 140 42.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.6e-18 97.1 118 50.8
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.6e-18 97.1 122 50.0
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.6e-18 97.1 127 48.8
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.1e-18 96.7 109 51.4
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 2.8e-18 96.3 113 46.0
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.8e-18 96.3 143 41.3
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.8e-18 96.3 123 45.5
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 2.8e-18 96.3 119 47.9
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.7e-18 95.9 122 50.0
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 3.7e-18 95.9 119 48.7
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.8e-18 95.5 122 44.3
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 6.2e-18 95.1 164 43.3
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 6.2e-18 95.1 120 46.7
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.4e-17 94.0 135 40.7
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.4e-17 93.2 114 49.1
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 3.1e-17 92.8 123 47.2
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 4.0e-17 92.4 132 42.4
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.3e-17 92.0 116 50.0
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.9e-17 91.7 102 52.9
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 2.6e-16 89.7 119 44.5
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.4e-16 89.4 119 47.1
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 3.4e-16 89.4 116 46.6
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 4.5e-16 89.0 119 47.1
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.2e-15 86.7 102 52.0
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 2.9e-15 86.3 125 43.2
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 2.9e-15 86.3 116 42.2
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 4.9e-15 85.5 120 45.0
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.4e-15 85.1 119 45.4
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 8.4e-15 84.7 115 40.9
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 8.4e-15 84.7 122 45.1
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.6e-13 80.5 78 55.1
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 2.1e-13 80.1 90 50.0
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 2.1e-13 80.1 90 50.0
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.7e-13 79.7 132 41.7
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.0e-12 76.3 123 39.0
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.0e-12 76.3 161 32.9
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 3.9e-12 75.9 124 41.1
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 6.7e-12 75.1 137 42.3
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 2.5e-11 73.2 143 37.1
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 7.4e-11 71.6 129 42.6
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 3.7e-10 69.3 88 45.5
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.1e-09 67.8 87 41.4
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.4e-09 67.4 124 41.9
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 3.1e-09 66.2 142 33.1
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 6.9e-09 65.1 132 37.1
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 9.0e-09 64.7 157 33.1
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 3.4e-08 62.8 75 52.0
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 5.8e-08 62.0 112 35.7
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 7.6e-08 61.6 117 38.5
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 7.6e-08 61.6 125 32.0
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 7.6e-08 61.6 123 39.0
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 1.0e-07 61.2 101 40.6
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.3e-07 60.8 104 37.5
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 3.8e-07 59.3 102 41.2
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 3.8e-07 59.3 131 34.4
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 8.4e-07 58.2 101 40.6
Cpa.g.sc95.59 Carica papaya HOM05D001798 ORTHO05D005040 1.9e-06 57.0 98 39.8
Haze_21743 Corylus avellana HOM05D001798 ORTHO05D005040 1.9e-06 57.0 103 35.0
Cfa013272 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.2e-06 56.2 106 34.0


User provided reference genes

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