Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 9.1e-116 420.2 210 100.0
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.4e-55 220.3 218 57.3
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.0e-54 216.5 224 59.4
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 5.6e-49 198.4 215 58.1
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 5.3e-47 191.8 219 53.9
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.1e-44 184.1 212 55.7
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 9.3e-44 181.0 221 54.8
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.0e-42 177.6 223 52.5
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 5.6e-41 171.8 229 51.1
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 7.4e-41 171.4 239 48.5
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 1.2e-38 164.1 243 46.9
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 1.7e-37 160.2 235 43.8
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 2.2e-37 159.8 219 50.2
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.1e-36 157.5 227 47.1
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 1.2e-35 154.1 229 45.4
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 3.5e-35 152.5 225 44.9
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.0e-34 151.0 225 45.8
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.3e-34 149.8 245 44.9
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 3.9e-34 149.1 222 45.5
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 3.9e-34 149.1 260 40.0
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 5.1e-34 148.7 213 48.4
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 1.5e-33 147.1 257 42.8
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.5e-33 147.1 242 45.0
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 3.3e-33 146.0 233 48.5
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 7.4e-33 144.8 241 44.0
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 1.3e-32 144.1 232 44.8
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 2.1e-32 143.3 242 43.8
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 2.8e-32 142.9 239 41.0
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 2.8e-32 142.9 227 45.8
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 3.7e-32 142.5 233 48.5
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 6.2e-32 141.7 239 41.8
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 6.2e-32 141.7 229 43.2
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 6.2e-32 141.7 247 40.9
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 8.2e-32 141.4 240 40.4
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 8.2e-32 141.4 265 41.5
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 8.2e-32 141.4 260 41.2
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.1e-31 141.0 232 43.1
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 1.1e-31 141.0 256 39.8
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.4e-31 140.6 260 40.8
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.8e-31 140.2 231 44.2
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 1.8e-31 140.2 241 41.5
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.8e-31 140.2 225 45.3
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 2.4e-31 139.8 238 38.7
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 5.3e-31 138.7 250 43.2
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 6.9e-31 138.3 251 43.0
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 9.0e-31 137.9 233 43.3
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 1.2e-30 137.5 216 44.0
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 1.5e-30 137.1 224 42.4
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 1.5e-30 137.1 247 42.9
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 2.0e-30 136.7 233 42.5
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.0e-30 136.7 232 45.7
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 2.0e-30 136.7 182 51.6
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 2.0e-30 136.7 222 45.0
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 2.6e-30 136.3 228 42.5
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 3.4e-30 136.0 260 41.5
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 5.8e-30 135.2 236 41.9
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 7.6e-30 134.8 239 41.0
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.0e-29 134.4 226 40.7
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.3e-29 134.0 236 44.1
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 1.3e-29 134.0 222 44.6
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.7e-29 133.7 219 42.9
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.2e-29 133.3 232 43.1
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.2e-29 133.3 232 43.1
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 2.2e-29 133.3 241 41.1
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 2.9e-29 132.9 254 43.3
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 3.8e-29 132.5 223 42.6
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 3.8e-29 132.5 249 41.8
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.8e-29 132.5 232 42.7
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 6.5e-29 131.7 238 38.7
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.1e-28 131.0 219 42.5
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 1.1e-28 131.0 246 39.4
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.1e-28 131.0 282 37.2
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 2.5e-28 129.8 242 38.8
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 4.2e-28 129.0 231 42.0
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 7.1e-28 128.3 228 41.2
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 9.3e-28 127.9 231 43.7
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.6e-27 127.1 223 42.2
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 2.1e-27 126.7 218 39.9
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 2.7e-27 126.3 233 40.8
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 7.9e-27 124.8 217 40.1
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 7.9e-27 124.8 181 45.3
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.9e-26 122.5 210 41.4
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 5.1e-26 122.1 239 39.7
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.7e-26 121.7 210 41.4
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 8.7e-26 121.3 248 39.9
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 1.9e-25 120.2 183 42.6
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 3.3e-25 119.4 246 39.4
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 4.3e-25 119.0 231 41.1
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 5.7e-25 118.6 231 41.1
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 5.7e-25 118.6 231 41.1
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 5.7e-25 118.6 248 38.7
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 9.7e-25 117.9 264 37.1
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 9.7e-25 117.9 229 39.7
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 9.7e-25 117.9 229 39.7
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.3e-24 117.5 199 41.7
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.2e-24 116.7 209 40.7
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.8e-24 116.3 242 38.0
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 4.8e-24 115.5 235 40.0
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 2.4e-23 113.2 226 37.2
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 3.1e-23 112.8 233 39.5
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 3.1e-23 112.8 251 37.5
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 9.0e-23 111.3 171 43.3
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 4.5e-22 109.0 239 38.1
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 1.0e-21 107.8 236 35.6
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.3e-21 107.5 243 36.2
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 3.8e-21 105.9 240 38.8
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 5.0e-21 105.5 240 38.3
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 6.5e-21 105.1 223 36.3
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 8.5e-21 104.8 248 35.9
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 8.5e-21 104.8 247 36.4
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.9e-20 103.6 247 36.0
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 3.2e-20 102.8 243 37.4
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 3.2e-20 102.8 243 37.4
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 3.2e-20 102.8 243 37.4
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 3.2e-20 102.8 215 43.7
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 5.5e-20 102.1 206 38.3
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 1.2e-19 100.9 263 36.9
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 1.2e-19 100.9 221 36.2
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 1.6e-19 100.5 227 35.2
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 1.6e-19 100.5 227 35.2
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.1e-19 100.1 232 35.3
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 2.7e-19 99.8 228 36.4
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.6e-19 99.4 162 42.6
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.6e-19 99.0 244 35.7
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 6.1e-19 98.6 110 54.5
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.4e-18 97.4 254 35.0
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 2.3e-18 96.7 255 34.1
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 2.0e-17 93.6 145 49.0
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 2.0e-17 93.6 221 39.4
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 2.5e-17 93.2 227 35.2
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.3e-17 92.8 133 45.9
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.3e-17 92.4 200 37.0
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.3e-17 92.4 239 35.1
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.7e-17 92.0 126 45.2
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.7e-16 90.5 170 42.9
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.7e-16 90.5 132 44.7
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 3.7e-16 89.4 135 45.2
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 3.7e-16 89.4 244 31.6
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 6.3e-16 88.6 127 45.7
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 1.8e-15 87.0 177 36.7
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 2.4e-15 86.7 232 30.2
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 5.3e-15 85.5 218 34.9
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 6.9e-15 85.1 172 37.2
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.2e-14 84.3 258 32.2
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.2e-14 84.3 124 48.4
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 2.0e-14 83.6 230 36.1
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 2.6e-14 83.2 190 36.3
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 5.9e-14 82.0 234 34.2
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 2.9e-13 79.7 161 38.5
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.3e-10 70.1 128 40.6
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 3.9e-10 69.3 90 47.8
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 5.1e-10 68.9 177 37.3
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 6.7e-10 68.6 79 55.7
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 6.7e-10 68.6 132 43.2
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.0e-09 67.0 156 36.5
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 7.4e-09 65.1 135 34.8
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 2.2e-08 63.5 88 50.0
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.8e-08 63.2 146 34.9
Zm00001eb093500 Zea mays HOM05D015271 ORTHO05D004907 3.1e-07 59.7 119 40.3
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 5.3e-07 58.9 198 27.3
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 7.0e-07 58.5 103 38.8
Zm00001eb395510 Zea mays HOM05D015271 ORTHO05D020944 9.1e-07 58.2 192 33.9
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 1.2e-06 57.8 80 45.0
Os07g0686600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 1.5e-06 57.4 161 36.0
Zm00001eb405310 Zea mays HOM05D015271 ORTHO05D004907 4.5e-06 55.8 134 38.1


User provided reference genes

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