Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 3.1e-142 508.4 258 100.0
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 7.3e-91 337.8 310 61.9
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 4.7e-90 335.1 259 68.3
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.1e-73 280.8 269 61.3
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 4.9e-71 271.9 271 62.4
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 2.6e-64 249.6 264 56.4
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 7.1e-62 241.5 283 54.1
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.0e-56 223.4 278 51.1
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.1e-54 217.6 263 56.7
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.5e-54 216.5 274 50.7
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.5e-54 216.5 280 51.8
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.8e-52 210.3 275 49.8
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 3.9e-52 209.1 272 51.5
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.1e-51 207.6 268 54.1
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.1e-50 203.4 277 50.2
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 4.1e-49 199.1 269 52.4
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.3e-49 198.7 260 51.2
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 9.0e-49 198.0 267 51.3
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 1.5e-48 197.2 269 52.0
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 3.4e-48 196.1 266 48.5
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 3.4e-48 196.1 263 49.8
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 4.5e-48 195.7 299 47.5
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 7.6e-48 194.9 260 48.8
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 2.2e-47 193.4 261 51.0
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.8e-47 192.6 268 49.6
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 8.4e-47 191.4 259 49.0
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 5.5e-46 188.7 273 48.4
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 9.3e-46 188.0 262 49.2
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 4.6e-45 185.7 272 49.6
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.0e-44 184.5 319 42.6
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 2.3e-44 183.3 266 48.9
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 3.0e-44 183.0 265 48.7
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 3.9e-44 182.6 266 46.6
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 3.9e-44 182.6 267 50.6
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.1e-43 181.0 263 46.8
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.9e-43 180.3 282 45.4
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.5e-43 179.9 262 46.9
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 5.7e-43 178.7 272 47.4
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 7.4e-43 178.3 274 47.1
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.7e-42 176.0 225 50.7
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 3.7e-42 176.0 253 47.4
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 6.3e-42 175.3 210 51.4
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.4e-41 174.1 274 46.4
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.4e-41 173.3 273 45.8
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 2.4e-41 173.3 263 44.9
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 2.4e-41 173.3 268 46.6
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 3.1e-41 172.9 267 48.3
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 6.9e-41 171.8 268 47.8
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 9.0e-41 171.4 268 45.1
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 3.4e-40 169.5 234 50.9
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 4.5e-40 169.1 268 43.3
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 7.7e-40 168.3 249 48.2
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 2.9e-39 166.4 285 43.5
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.0e-39 165.6 169 58.6
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.1e-38 164.5 274 44.5
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.1e-38 164.5 271 45.0
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.1e-38 164.5 261 46.0
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.5e-38 163.3 220 50.0
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 4.2e-38 162.5 260 46.2
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 7.2e-38 161.8 265 44.9
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 7.2e-38 161.8 266 45.1
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.1e-37 160.2 273 44.7
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.0e-36 157.9 275 42.5
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.8e-36 157.1 271 43.5
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.0e-36 156.4 268 45.5
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 3.9e-36 156.0 247 45.7
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 3.9e-36 156.0 279 41.2
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 5.1e-36 155.6 268 44.0
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 5.1e-36 155.6 276 43.5
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 5.1e-36 155.6 264 42.8
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 8.8e-36 154.8 276 43.1
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.1e-35 154.5 271 43.5
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 4.3e-35 152.5 272 43.0
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 7.4e-35 151.8 276 43.1
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 9.7e-35 151.4 270 43.0
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 9.7e-35 151.4 277 40.8
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.3e-34 151.0 270 43.0
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 1.7e-34 150.6 230 46.1
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 3.7e-34 149.4 275 42.5
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.7e-34 149.4 267 43.1
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.7e-34 149.4 267 43.1
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 4.8e-34 149.1 276 40.6
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 8.2e-34 148.3 268 43.7
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 1.1e-33 147.9 275 42.9
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.1e-33 147.9 268 43.3
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-33 147.5 265 43.8
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-33 147.5 265 43.8
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-33 146.7 264 44.7
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 4.1e-33 146.0 268 42.9
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 4.1e-33 146.0 266 43.6
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-33 146.0 266 43.6
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 5.3e-33 145.6 274 40.5
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 5.3e-33 145.6 201 45.8
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.1e-33 144.8 268 43.7
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.2e-32 144.4 284 40.1
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-32 144.4 267 42.3
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.0e-32 143.7 259 43.6
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 4.5e-32 142.5 267 43.4
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.7e-32 141.7 268 41.0
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 7.7e-32 141.7 278 41.4
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.0e-31 141.4 275 40.7
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.7e-31 140.6 249 41.4
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.2e-31 140.2 259 43.2
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.2e-31 140.2 267 41.6
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 2.2e-31 140.2 258 43.0
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 2.9e-31 139.8 274 40.9
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 5.0e-31 139.0 152 58.6
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 6.5e-31 138.7 271 42.4
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 8.5e-31 138.3 270 41.9
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-30 137.9 263 42.6
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.1e-30 137.9 279 41.2
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 1.1e-30 137.9 136 57.4
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.1e-30 137.9 261 41.0
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.4e-30 137.5 277 41.9
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.9e-30 137.1 268 41.0
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 2.5e-30 136.7 263 43.3
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.5e-30 136.7 262 40.5
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 3.2e-30 136.3 233 42.9
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 9.4e-30 134.8 271 41.7
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 9.4e-30 134.8 261 39.1
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 2.7e-29 133.3 269 41.6
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 3.6e-29 132.9 261 42.5
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 3.6e-29 132.9 261 42.1
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 3.6e-29 132.9 261 42.5
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 6.1e-29 132.1 259 41.3
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 2.3e-28 130.2 157 54.1
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.3e-28 130.2 173 48.6
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.0e-28 129.8 272 40.4
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 3.9e-28 129.4 261 41.8
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 3.9e-28 129.4 261 41.8
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-27 127.9 271 41.3
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.6e-27 126.7 279 39.1
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 3.3e-27 126.3 269 38.7
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 4.4e-27 125.9 268 42.9
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 7.4e-27 125.2 264 43.2
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.3e-26 124.4 270 37.4
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.8e-25 120.6 190 43.7
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 3.1e-25 119.8 260 39.6
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 4.1e-25 119.4 265 40.8
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 5.3e-25 119.0 268 38.4
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 7.0e-25 118.6 262 42.4
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 2.0e-24 117.1 193 45.1
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 7.7e-24 115.2 184 45.1
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.3e-23 114.4 277 39.4
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 6.5e-23 112.1 119 55.5
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.9e-22 110.5 151 50.3
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 5.5e-22 109.0 259 38.2
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 9.4e-22 108.2 208 40.9
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 9.4e-22 108.2 216 36.1
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 1.2e-21 107.8 265 35.1
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 3.6e-21 106.3 265 33.6
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.4e-20 104.4 262 37.4
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.8e-20 104.0 206 41.3
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.0e-20 102.8 211 38.4
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.5e-19 100.9 217 38.7
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 2.6e-19 100.1 208 39.4
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 5.7e-19 99.0 158 43.7
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 8.2e-18 95.1 287 34.1
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 2.4e-17 93.6 135 43.0
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 2.7e-16 90.1 77 64.9
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 3.5e-16 89.7 152 39.5
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.5e-16 89.7 251 32.3
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.3e-15 87.8 267 32.2
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.7e-15 87.4 174 37.4
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.8e-15 86.3 174 37.4
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 9.4e-14 81.6 193 36.3
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.1e-13 80.5 262 30.9
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 4.7e-13 79.3 368 26.9
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.5e-11 74.3 69 58.0
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 2.6e-11 73.6 212 33.5
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-09 68.2 158 32.9
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.8e-09 67.4 194 34.0
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.6e-08 64.3 99 46.5
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.9e-07 60.1 75 49.3
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 5.0e-07 59.3 177 32.2
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 4.2e-06 56.2 154 31.2
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 7.2e-06 55.5 90 40.0
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 9.4e-06 55.1 195 31.3


User provided reference genes

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