Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 7.4e-127 457.2 230 100.0
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 8.2e-102 374.0 230 81.7
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.7e-97 359.0 223 79.4
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.1e-93 347.1 226 74.8
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.8e-93 346.3 223 76.7
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.5e-92 342.0 223 75.3
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 2.2e-91 339.3 226 75.2
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 2.2e-91 339.3 223 74.0
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 9.4e-90 334.0 224 73.7
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 1.6e-89 333.2 221 72.4
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 4.7e-89 331.6 221 73.3
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 2.3e-88 329.3 227 70.0
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.9e-88 328.6 227 72.2
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 6.7e-88 327.8 226 72.6
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 8.8e-88 327.4 220 71.8
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 2.0e-87 326.2 221 71.9
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 2.6e-87 325.9 230 71.7
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 3.3e-87 325.5 227 70.9
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 5.7e-87 324.7 221 71.5
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 7.4e-87 324.3 225 72.0
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 9.7e-87 323.9 222 73.9
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 9.7e-87 323.9 227 70.5
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.3e-86 323.6 224 71.9
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.7e-86 323.2 221 71.0
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.7e-86 323.2 222 73.4
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 1.7e-86 323.2 221 71.5
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.8e-86 322.4 230 71.3
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 2.8e-86 322.4 221 71.5
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 3.7e-86 322.0 221 70.6
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 6.3e-86 321.2 230 66.1
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 6.3e-86 321.2 222 73.0
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.1e-85 320.5 223 70.4
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 1.4e-85 320.1 223 69.5
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.4e-85 320.1 222 72.5
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.8e-85 319.7 221 70.1
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.4e-85 319.3 221 71.0
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 4.1e-85 318.5 224 70.5
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 5.3e-85 318.2 223 70.4
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.3e-85 318.2 222 73.0
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 5.3e-85 318.2 221 71.0
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.3e-85 318.2 221 71.0
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 5.3e-85 318.2 222 71.2
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 7.0e-85 317.8 222 68.5
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.2e-84 317.0 223 69.5
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.2e-84 317.0 221 71.0
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.2e-84 317.0 221 71.0
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.6e-84 316.6 221 70.1
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.6e-84 316.6 225 69.3
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.6e-84 316.6 225 69.3
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 2.0e-84 316.2 227 69.6
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.6e-84 315.8 226 70.8
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 3.5e-84 315.5 221 70.1
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 5.9e-84 314.7 231 67.1
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 7.7e-84 314.3 230 64.3
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.0e-83 313.9 221 65.6
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.3e-83 313.5 221 70.1
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.7e-83 313.2 209 71.8
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.2e-83 312.8 221 67.0
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 2.9e-83 312.4 223 68.6
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 5.0e-83 311.6 222 67.1
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 6.5e-83 311.2 221 69.7
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 6.5e-83 311.2 227 68.3
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 8.5e-83 310.8 230 66.5
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 8.5e-83 310.8 221 67.9
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 8.5e-83 310.8 222 69.4
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 8.5e-83 310.8 218 67.9
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 1.1e-82 310.5 221 70.1
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 1.9e-82 309.7 221 69.7
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.9e-82 309.7 228 66.2
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.9e-82 309.7 221 68.8
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.9e-82 309.7 223 68.6
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 3.2e-82 308.9 221 68.3
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 3.2e-82 308.9 222 68.9
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 5.5e-82 308.1 221 67.9
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.5e-82 308.1 228 65.4
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 7.2e-82 307.8 230 65.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 9.4e-82 307.4 221 67.4
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 9.4e-82 307.4 221 67.4
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 9.4e-82 307.4 215 67.0
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 1.2e-81 307.0 221 66.5
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 2.1e-81 306.2 230 65.2
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.1e-81 306.2 236 62.3
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 2.1e-81 306.2 236 62.3
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 2.7e-81 305.8 230 65.2
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 3.6e-81 305.4 223 68.2
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 4.7e-81 305.1 223 67.7
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 6.1e-81 304.7 224 67.0
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 8.0e-81 304.3 228 66.2
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 1.4e-80 303.5 227 65.6
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 2.3e-80 302.8 221 66.1
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.3e-80 302.8 228 65.8
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.3e-80 302.8 230 66.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 3.0e-80 302.4 220 68.2
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 5.2e-80 301.6 223 65.0
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 8.8e-80 300.8 218 67.4
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 1.2e-79 300.4 245 62.4
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.0e-79 299.7 223 66.4
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 2.6e-79 299.3 213 68.1
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 3.3e-79 298.9 220 64.5
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 5.7e-79 298.1 229 65.1
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 5.7e-79 298.1 229 65.1
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 5.7e-79 298.1 316 54.7
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 7.5e-79 297.7 209 70.3
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 7.5e-79 297.7 226 65.9
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 2.8e-78 295.8 228 63.6
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 6.3e-78 294.7 228 62.7
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 5.3e-77 291.6 221 65.6
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.2e-76 290.4 220 63.2
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.6e-76 290.0 220 62.7
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.7e-76 289.3 221 65.2
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 8.5e-75 284.3 221 64.3
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 5.5e-74 281.6 221 65.6
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 1.6e-73 280.0 220 62.3
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 2.3e-72 276.2 218 62.8
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.0e-72 275.4 220 62.3
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 6.8e-72 274.6 220 59.5
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.2e-71 273.9 221 64.7
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.5e-71 273.5 322 48.4
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 5.7e-71 271.6 220 60.0
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.3e-70 270.4 179 76.0
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 2.0e-68 263.1 227 56.8
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 5.0e-67 258.5 153 81.7
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.1e-66 257.3 353 43.9
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 8.9e-64 247.7 153 78.4
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.3e-62 243.8 177 69.5
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.3e-62 243.8 225 56.9
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 2.3e-59 233.0 152 72.4
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.5e-55 220.3 152 69.1
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.6e-49 199.1 125 77.6
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 3.6e-49 199.1 165 60.6
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 3.1e-48 196.1 130 72.3
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 5.8e-47 191.8 147 68.7
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 3.7e-46 189.1 107 84.1
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 9.2e-45 184.5 197 51.8
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 2.3e-43 179.9 111 74.8
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 2.3e-43 179.9 111 74.8
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.6e-41 173.7 220 45.0
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.4e-40 170.6 99 80.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 2.3e-35 153.3 95 74.7
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 1.1e-34 151.0 114 64.9
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.6e-33 147.1 115 64.3
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 2.1e-33 146.7 205 37.6
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.6e-31 139.8 115 60.9
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 4.6e-28 129.0 115 55.7
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.0e-27 127.9 82 76.8
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 2.3e-27 126.7 139 48.2
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 9.9e-23 111.3 102 54.9
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 2.3e-19 100.1 81 61.7
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.4e-16 90.1 125 45.6
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 1.4e-13 80.9 57 70.2
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 2.5e-10 70.1 47 70.2
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 9.6e-10 68.2 77 44.2
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 5.8e-07 58.9 48 60.4


User provided reference genes

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