Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.1e-71 272.3 143 100.0
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.1e-48 196.8 145 72.4
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.6e-42 176.4 146 65.8
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 8.6e-41 170.6 147 65.3
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 2.5e-40 169.1 146 65.8
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 4.2e-40 168.3 146 64.4
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.6e-39 166.4 143 59.4
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.6e-39 165.2 146 61.6
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 3.6e-39 165.2 144 59.7
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.6e-39 165.2 146 66.4
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 8.0e-39 164.1 146 63.0
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 8.0e-39 164.1 146 63.0
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 2.3e-38 162.5 149 60.4
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.3e-38 162.5 145 59.3
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.0e-38 162.2 146 59.6
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 6.8e-38 161.0 146 63.0
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 8.9e-38 160.6 146 54.8
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 2.0e-37 159.5 146 58.9
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 9.8e-37 157.1 146 58.2
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 2.8e-36 155.6 146 54.1
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 4.9e-36 154.8 146 59.6
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 8.3e-36 154.1 145 53.8
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 8.3e-36 154.1 146 59.6
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 8.3e-36 154.1 146 59.6
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.8e-35 152.9 145 53.8
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 3.1e-35 152.1 149 56.4
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 3.1e-35 152.1 149 56.4
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 4.1e-35 151.8 148 52.7
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 5.4e-35 151.4 142 55.6
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 5.4e-35 151.4 146 59.6
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 9.2e-35 150.6 146 58.9
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.6e-34 149.8 146 58.2
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 2.7e-34 149.1 146 58.2
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 3.5e-34 148.7 94 73.4
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.5e-34 148.3 146 52.7
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.7e-33 146.4 148 58.8
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.7e-33 146.4 146 52.7
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 5.0e-33 144.8 152 50.0
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 5.0e-33 144.8 146 56.2
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.1e-32 143.7 148 52.0
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.1e-32 143.7 150 48.0
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.5e-32 143.3 162 46.9
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.5e-32 143.3 160 52.5
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.9e-32 142.9 151 53.6
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.5e-32 142.5 143 55.2
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 3.3e-32 142.1 142 54.9
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 3.3e-32 142.1 146 50.7
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 5.6e-32 141.4 149 55.7
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 7.3e-32 141.0 149 53.7
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 7.3e-32 141.0 148 49.3
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 9.5e-32 140.6 145 49.7
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.6e-31 139.8 93 69.9
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.1e-31 139.4 146 57.5
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.1e-31 139.4 146 57.5
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 2.8e-31 139.0 152 57.2
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 3.6e-31 138.7 142 51.4
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 4.7e-31 138.3 151 50.3
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 6.1e-31 137.9 143 53.8
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 6.1e-31 137.9 159 45.3
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 6.1e-31 137.9 138 53.6
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 8.0e-31 137.5 90 70.0
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 8.0e-31 137.5 143 54.5
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.8e-30 136.3 155 45.2
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.0e-30 135.6 146 52.1
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 3.0e-30 135.6 90 70.0
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 3.0e-30 135.6 152 55.3
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 4.0e-30 135.2 173 51.4
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 5.2e-30 134.8 149 53.0
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.8e-30 134.4 146 51.4
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 6.8e-30 134.4 95 65.3
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 8.9e-30 134.0 91 67.0
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 1.2e-29 133.7 145 54.5
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.2e-29 133.7 153 52.9
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.5e-29 133.3 89 68.5
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 2.6e-29 132.5 152 50.7
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.4e-29 131.7 147 49.7
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 4.4e-29 131.7 89 67.4
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 5.8e-29 131.3 151 53.0
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 5.8e-29 131.3 92 68.5
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 7.5e-29 131.0 88 65.9
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 7.5e-29 131.0 105 61.0
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.5e-29 131.0 146 50.7
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 7.5e-29 131.0 155 54.2
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 7.5e-29 131.0 89 66.3
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.3e-28 130.2 143 50.3
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.3e-28 130.2 170 49.4
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.7e-28 129.8 146 52.1
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.7e-28 129.8 184 42.4
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.7e-28 129.8 94 62.8
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.2e-28 129.4 147 49.0
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 2.9e-28 129.0 150 49.3
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.7e-28 128.6 89 62.9
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 3.7e-28 128.6 160 53.1
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.9e-28 128.3 146 49.3
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 6.4e-28 127.9 147 48.3
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.1e-27 127.1 87 63.2
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.8e-27 126.3 151 51.0
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.8e-27 126.3 145 47.6
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.8e-27 126.3 90 67.8
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.8e-27 126.3 151 47.7
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 2.4e-27 125.9 146 49.3
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 4.1e-27 125.2 132 53.0
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.6e-26 123.2 142 48.6
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.0e-25 120.6 151 44.4
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 1.0e-25 120.6 154 48.1
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.0e-25 120.6 154 50.6
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 1.0e-25 120.6 154 48.1
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 2.3e-25 119.4 153 49.0
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.3e-25 119.4 151 47.7
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 3.0e-25 119.0 153 47.7
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.0e-25 119.0 143 49.0
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 3.0e-25 119.0 142 49.3
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.9e-25 118.6 153 49.0
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 6.6e-25 117.9 156 42.3
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 6.6e-25 117.9 143 51.0
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 8.6e-25 117.5 142 44.4
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.9e-24 116.3 145 44.1
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 1.9e-24 116.3 151 44.4
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.9e-24 116.3 150 47.3
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.7e-23 111.7 155 45.2
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 6.2e-23 111.3 68 75.0
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 8.0e-23 110.9 93 54.8
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.8e-22 109.8 152 41.4
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.0e-21 106.3 145 42.8
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.9e-19 99.8 255 33.3
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.9e-19 99.8 150 39.3
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 4.6e-18 95.1 59 69.5
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 5.0e-17 91.7 141 39.0
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.1e-16 90.5 112 52.7
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.5e-16 90.1 130 40.0
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.6e-15 86.7 86 48.8
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 2.8e-15 85.9 94 42.6
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.4e-14 83.6 83 50.6
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 1.4e-14 83.6 50 74.0
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 5.2e-14 81.6 83 47.0
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 8.9e-14 80.9 99 52.5
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.0e-13 79.7 47 74.5
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.7e-12 75.5 53 56.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 7.1e-11 71.2 103 50.5
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 1.6e-10 70.1 47 66.0
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.0e-09 67.4 106 44.3
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.3e-09 67.0 102 48.0
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 2.3e-09 66.2 70 60.0
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 2.3e-09 66.2 70 60.0
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 4.3e-08 62.0 35 80.0
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 4.7e-07 58.5 84 41.7
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 6.8e-06 54.7 36 66.7


User provided reference genes

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