Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 7.7e-104 380.6 202 100.0
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 1.2e-69 266.9 202 64.4
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 8.9e-60 234.2 176 65.9
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 5.4e-57 224.9 166 68.1
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 3.5e-56 222.2 159 66.7
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 1.7e-55 219.9 168 66.7
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.2e-53 213.8 197 57.9
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.6e-53 213.4 201 57.7
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 6.8e-52 208.0 162 60.5
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 1.2e-51 207.2 199 54.3
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.5e-51 206.8 160 63.8
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 3.4e-51 205.7 180 57.2
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 2.2e-50 203.0 162 63.6
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 4.9e-50 201.8 174 58.0
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 6.4e-50 201.4 197 56.3
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 6.4e-50 201.4 163 61.3
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 8.3e-50 201.1 154 64.9
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 9.2e-49 197.6 166 60.8
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.7e-48 196.1 160 60.6
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 3.5e-48 195.7 160 63.1
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 3.5e-48 195.7 197 54.8
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 4.6e-48 195.3 165 60.6
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 6.0e-48 194.9 149 64.4
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 1.0e-47 194.1 162 61.7
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.7e-47 193.4 199 53.8
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 1.7e-47 193.4 163 60.7
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.7e-47 193.4 163 61.3
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.7e-47 193.4 141 67.4
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 2.3e-47 193.0 162 59.9
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 3.9e-47 192.2 141 68.1
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 5.1e-47 191.8 165 57.6
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 6.6e-47 191.4 161 60.9
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 8.6e-47 191.0 152 62.5
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 8.6e-47 191.0 166 57.2
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.5e-46 190.3 157 60.5
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.9e-46 189.9 197 53.8
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.5e-46 189.5 145 61.4
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 5.6e-46 188.3 147 61.2
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 7.3e-46 188.0 129 70.5
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 1.6e-45 186.8 142 64.1
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 1.6e-45 186.8 162 57.4
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.6e-45 186.8 152 59.9
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.1e-45 186.4 147 63.3
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 2.1e-45 186.4 147 63.3
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 2.1e-45 186.4 165 55.8
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.1e-45 186.4 142 64.8
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.8e-45 186.0 142 61.3
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 2.8e-45 186.0 142 64.1
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 2.8e-45 186.0 162 57.4
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 8.1e-45 184.5 142 64.1
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 1.1e-44 184.1 155 57.4
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 4.0e-44 182.2 162 56.2
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 5.2e-44 181.8 144 63.9
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 6.8e-44 181.4 142 62.0
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 6.8e-44 181.4 138 63.8
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 8.9e-44 181.0 163 55.8
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.2e-43 180.6 141 62.4
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 1.5e-43 180.3 147 63.9
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 3.4e-43 179.1 154 57.8
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 3.4e-43 179.1 165 52.7
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 5.8e-43 178.3 154 60.4
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 7.6e-43 177.9 202 48.0
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 9.9e-43 177.6 188 46.8
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.3e-42 177.2 164 53.0
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.3e-42 177.2 126 67.5
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 1.3e-42 177.2 145 61.4
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.3e-42 177.2 157 55.4
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.2e-42 176.4 142 59.2
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.9e-42 176.0 157 56.7
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.9e-42 176.0 164 53.0
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 2.9e-42 176.0 119 70.6
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.9e-42 176.0 142 60.6
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 4.9e-42 175.3 147 62.6
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 4.9e-42 175.3 147 62.6
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 4.9e-42 175.3 147 62.6
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 4.9e-42 175.3 285 37.9
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 6.4e-42 174.9 164 53.7
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 8.4e-42 174.5 163 52.8
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.1e-41 174.1 165 53.9
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.1e-41 174.1 142 59.9
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.4e-41 173.7 168 51.8
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 2.4e-41 172.9 168 53.0
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 4.2e-41 172.2 168 51.2
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 7.1e-41 171.4 168 51.2
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 7.1e-41 171.4 163 52.1
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 1.2e-40 170.6 140 60.0
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 2.1e-40 169.9 155 53.5
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.7e-40 169.5 141 63.1
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 3.5e-40 169.1 144 59.7
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 3.5e-40 169.1 144 57.6
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 8.7e-39 164.5 165 49.1
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.5e-38 162.9 160 53.8
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 2.5e-38 162.9 184 50.5
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 7.3e-38 161.4 165 50.9
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 7.3e-38 161.4 144 60.4
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.3e-37 160.6 164 50.6
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 1.6e-37 160.2 164 50.6
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 2.8e-37 159.5 135 62.2
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.6e-37 159.1 121 63.6
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.1e-36 157.5 148 52.0
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.5e-35 153.7 152 55.3
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 6.4e-34 148.3 139 54.7
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-32 144.1 125 60.8
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.0e-31 141.0 143 51.0
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.3e-31 140.6 169 46.2
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 3.0e-31 139.4 131 55.0
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 1.1e-30 137.5 141 50.4
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.5e-30 137.1 138 52.9
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.9e-30 136.7 141 50.4
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.5e-30 136.3 146 50.7
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 5.6e-30 135.2 125 59.2
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 2.8e-29 132.9 124 54.8
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.3e-26 124.0 121 54.5
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.3e-26 124.0 121 54.5
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 1.1e-25 120.9 108 61.1
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.6e-24 117.1 109 54.1
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 2.1e-24 116.7 139 46.8
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 7.9e-24 114.8 91 58.2
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.3e-21 107.5 141 40.4
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 4.0e-20 102.4 95 52.6
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 6.9e-20 101.7 116 50.9
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 2.0e-19 100.1 98 57.1
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 2.9e-18 96.3 151 42.4
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 7.9e-16 88.2 88 52.3
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 2.3e-15 86.7 78 56.4
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 2.1e-13 80.1 73 56.2
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 4.8e-13 79.0 68 57.4
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 1.2e-11 74.3 75 49.3
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 3.4e-11 72.8 126 38.9
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-10 68.9 90 38.9
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.1e-09 67.8 96 46.9
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 5.5e-09 65.5 70 45.7
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 5.1e-07 58.9 51 49.0
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 4.3e-06 55.8 147 28.6


User provided reference genes

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